Results 61 - 77 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10707 | 3' | -49.9 | NC_002794.1 | + | 160295 | 0.68 | 0.994721 |
Target: 5'- -uGGUCGcugcucuGGugGAUGUUCGUCUUGGg -3' miRNA: 3'- cuUUAGUu------UCugCUGCGGGCAGAGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 115830 | 0.68 | 0.995455 |
Target: 5'- uGGAUC---GGCGGgGCCCGgcgggCUCGGg -3' miRNA: 3'- cUUUAGuuuCUGCUgCGGGCa----GAGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 68849 | 0.68 | 0.995455 |
Target: 5'- -cGGUCcccGACGAC-CCCGgagCUCGGg -3' miRNA: 3'- cuUUAGuuuCUGCUGcGGGCa--GAGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 46312 | 0.68 | 0.995455 |
Target: 5'- cGAGcgCGgcGGCGACgGCgCCGUCgccgCGGa -3' miRNA: 3'- -CUUuaGUuuCUGCUG-CG-GGCAGa---GCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 147002 | 0.68 | 0.996104 |
Target: 5'- cGAcGUCGgcGGCGGCGgCCGccggcgCUCGGu -3' miRNA: 3'- -CUuUAGUuuCUGCUGCgGGCa-----GAGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 115231 | 0.68 | 0.996104 |
Target: 5'- cGGAUCuggcucuuGACGACGuCCaCGUCgUCGGg -3' miRNA: 3'- cUUUAGuuu-----CUGCUGC-GG-GCAG-AGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 61861 | 0.68 | 0.996674 |
Target: 5'- ----cCAuGGACGACGCCgcgcgcCGUCgUCGGc -3' miRNA: 3'- cuuuaGUuUCUGCUGCGG------GCAG-AGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 191360 | 0.67 | 0.997127 |
Target: 5'- aGGAGUCGGGGACGggccggacccuccGCGCCCG---CGGc -3' miRNA: 3'- -CUUUAGUUUCUGC-------------UGCGGGCagaGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 145637 | 0.67 | 0.997174 |
Target: 5'- gGAGAUCGGAccCGA-GCUCGUCgUCGGg -3' miRNA: 3'- -CUUUAGUUUcuGCUgCGGGCAG-AGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 141899 | 0.67 | 0.99761 |
Target: 5'- --cGUCc-AGGCGACGCgCCGuUCUCGcGg -3' miRNA: 3'- cuuUAGuuUCUGCUGCG-GGC-AGAGC-C- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 70332 | 0.67 | 0.997989 |
Target: 5'- ----gCGAAGACGccgacggccggGCGCCCG-CUCGu -3' miRNA: 3'- cuuuaGUUUCUGC-----------UGCGGGCaGAGCc -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 110209 | 0.67 | 0.997989 |
Target: 5'- aGggGUCGcucAgGACGUCCGUC-CGGa -3' miRNA: 3'- -CuuUAGUuucUgCUGCGGGCAGaGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 141372 | 0.67 | 0.997989 |
Target: 5'- cGGAGagAAcGGCGAcCGUCCGUCguUCGGg -3' miRNA: 3'- -CUUUagUUuCUGCU-GCGGGCAG--AGCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 17251 | 0.67 | 0.998315 |
Target: 5'- ---uUCGAcGGCGGCGaCCCGgCUCGu -3' miRNA: 3'- cuuuAGUUuCUGCUGC-GGGCaGAGCc -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 2070 | 0.67 | 0.998315 |
Target: 5'- gGAAGUCcGAGACGAcCGCCgGcCUuauaCGGc -3' miRNA: 3'- -CUUUAGuUUCUGCU-GCGGgCaGA----GCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 119504 | 0.67 | 0.998315 |
Target: 5'- cGggGUCGucGGCGGCGCggagCCGgccgCGGa -3' miRNA: 3'- -CuuUAGUuuCUGCUGCG----GGCaga-GCC- -5' |
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10707 | 3' | -49.9 | NC_002794.1 | + | 178552 | 0.66 | 0.99948 |
Target: 5'- -cGAUCGGGcaccACGucuucACGCCgGUCUCGGa -3' miRNA: 3'- cuUUAGUUUc---UGC-----UGCGGgCAGAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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