miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10707 3' -49.9 NC_002794.1 + 17251 0.67 0.998315
Target:  5'- ---uUCGAcGGCGGCGaCCCGgCUCGu -3'
miRNA:   3'- cuuuAGUUuCUGCUGC-GGGCaGAGCc -5'
10707 3' -49.9 NC_002794.1 + 2070 0.67 0.998315
Target:  5'- gGAAGUCcGAGACGAcCGCCgGcCUuauaCGGc -3'
miRNA:   3'- -CUUUAGuUUCUGCU-GCGGgCaGA----GCC- -5'
10707 3' -49.9 NC_002794.1 + 119504 0.67 0.998315
Target:  5'- cGggGUCGucGGCGGCGCggagCCGgccgCGGa -3'
miRNA:   3'- -CuuUAGUuuCUGCUGCG----GGCaga-GCC- -5'
10707 3' -49.9 NC_002794.1 + 141372 0.67 0.997989
Target:  5'- cGGAGagAAcGGCGAcCGUCCGUCguUCGGg -3'
miRNA:   3'- -CUUUagUUuCUGCU-GCGGGCAG--AGCC- -5'
10707 3' -49.9 NC_002794.1 + 110209 0.67 0.997989
Target:  5'- aGggGUCGcucAgGACGUCCGUC-CGGa -3'
miRNA:   3'- -CuuUAGUuucUgCUGCGGGCAGaGCC- -5'
10707 3' -49.9 NC_002794.1 + 70332 0.67 0.997989
Target:  5'- ----gCGAAGACGccgacggccggGCGCCCG-CUCGu -3'
miRNA:   3'- cuuuaGUUUCUGC-----------UGCGGGCaGAGCc -5'
10707 3' -49.9 NC_002794.1 + 141899 0.67 0.99761
Target:  5'- --cGUCc-AGGCGACGCgCCGuUCUCGcGg -3'
miRNA:   3'- cuuUAGuuUCUGCUGCG-GGC-AGAGC-C- -5'
10707 3' -49.9 NC_002794.1 + 145637 0.67 0.997174
Target:  5'- gGAGAUCGGAccCGA-GCUCGUCgUCGGg -3'
miRNA:   3'- -CUUUAGUUUcuGCUgCGGGCAG-AGCC- -5'
10707 3' -49.9 NC_002794.1 + 191360 0.67 0.997127
Target:  5'- aGGAGUCGGGGACGggccggacccuccGCGCCCG---CGGc -3'
miRNA:   3'- -CUUUAGUUUCUGC-------------UGCGGGCagaGCC- -5'
10707 3' -49.9 NC_002794.1 + 61861 0.68 0.996674
Target:  5'- ----cCAuGGACGACGCCgcgcgcCGUCgUCGGc -3'
miRNA:   3'- cuuuaGUuUCUGCUGCGG------GCAG-AGCC- -5'
10707 3' -49.9 NC_002794.1 + 147002 0.68 0.996104
Target:  5'- cGAcGUCGgcGGCGGCGgCCGccggcgCUCGGu -3'
miRNA:   3'- -CUuUAGUuuCUGCUGCgGGCa-----GAGCC- -5'
10707 3' -49.9 NC_002794.1 + 115231 0.68 0.996104
Target:  5'- cGGAUCuggcucuuGACGACGuCCaCGUCgUCGGg -3'
miRNA:   3'- cUUUAGuuu-----CUGCUGC-GG-GCAG-AGCC- -5'
10707 3' -49.9 NC_002794.1 + 46312 0.68 0.995455
Target:  5'- cGAGcgCGgcGGCGACgGCgCCGUCgccgCGGa -3'
miRNA:   3'- -CUUuaGUuuCUGCUG-CG-GGCAGa---GCC- -5'
10707 3' -49.9 NC_002794.1 + 68849 0.68 0.995455
Target:  5'- -cGGUCcccGACGAC-CCCGgagCUCGGg -3'
miRNA:   3'- cuUUAGuuuCUGCUGcGGGCa--GAGCC- -5'
10707 3' -49.9 NC_002794.1 + 115830 0.68 0.995455
Target:  5'- uGGAUC---GGCGGgGCCCGgcgggCUCGGg -3'
miRNA:   3'- cUUUAGuuuCUGCUgCGGGCa----GAGCC- -5'
10707 3' -49.9 NC_002794.1 + 160295 0.68 0.994721
Target:  5'- -uGGUCGcugcucuGGugGAUGUUCGUCUUGGg -3'
miRNA:   3'- cuUUAGUu------UCugCUGCGGGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 13341 0.68 0.993894
Target:  5'- -cGGUCGGGGgugGCGGCGCCCcUCgccCGGg -3'
miRNA:   3'- cuUUAGUUUC---UGCUGCGGGcAGa--GCC- -5'
10707 3' -49.9 NC_002794.1 + 180728 0.68 0.993894
Target:  5'- aGAGAcgCGcGGACGACGCC-GUC-CGGc -3'
miRNA:   3'- -CUUUa-GUuUCUGCUGCGGgCAGaGCC- -5'
10707 3' -49.9 NC_002794.1 + 175749 0.68 0.993894
Target:  5'- cGAGUCu--GugGACGCuagugaCCGUUUCGGc -3'
miRNA:   3'- cUUUAGuuuCugCUGCG------GGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 138116 0.69 0.992965
Target:  5'- -----gGAGGGCGuggugcucguCGCCgGUCUCGGg -3'
miRNA:   3'- cuuuagUUUCUGCu---------GCGGgCAGAGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.