Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10707 | 5' | -58.3 | NC_002794.1 | + | 180691 | 0.68 | 0.810075 |
Target: 5'- cUCCCGG-CGCccGGCGGGcggaccauggCUCGGgUUCa -3' miRNA: 3'- -AGGGCCuGCG--CCGCUCa---------GAGCUgAAG- -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 35646 | 0.68 | 0.801576 |
Target: 5'- aCCCGGgACG-GGCGcccGGUCUcCGACguggUCa -3' miRNA: 3'- aGGGCC-UGCgCCGC---UCAGA-GCUGa---AG- -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 49475 | 0.68 | 0.810075 |
Target: 5'- -aCCGGcCGCcGCGGGUCugUCGACcUCg -3' miRNA: 3'- agGGCCuGCGcCGCUCAG--AGCUGaAG- -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 146230 | 0.68 | 0.77526 |
Target: 5'- cUCCuCGGuCGCGGCGucgucaucGUCgUCGACcUCg -3' miRNA: 3'- -AGG-GCCuGCGCCGCu-------CAG-AGCUGaAG- -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 90581 | 0.68 | 0.766242 |
Target: 5'- gUCCCGGGCGCuccagucccGuCGGGcCUCGACggUCg -3' miRNA: 3'- -AGGGCCUGCG---------CcGCUCaGAGCUGa-AG- -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 81978 | 0.68 | 0.77526 |
Target: 5'- uUCCCGGACGCG-CGAccGUUgcccgUCGACg-- -3' miRNA: 3'- -AGGGCCUGCGCcGCU--CAG-----AGCUGaag -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 64813 | 0.68 | 0.801576 |
Target: 5'- gCCgCGGACgGCGGCGAG-C-CGGCg-- -3' miRNA: 3'- aGG-GCCUG-CGCCGCUCaGaGCUGaag -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 38599 | 0.67 | 0.824994 |
Target: 5'- cUCCCGGACGagaggccggacgGGCGcGUCcCGACUc- -3' miRNA: 3'- -AGGGCCUGCg-----------CCGCuCAGaGCUGAag -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 143119 | 0.67 | 0.842514 |
Target: 5'- gCUCGGcCGUGGCGcaGGUCUCGGg--- -3' miRNA: 3'- aGGGCCuGCGCCGC--UCAGAGCUgaag -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 23714 | 0.67 | 0.834652 |
Target: 5'- gUCCCGaaccgcGCGCGGCGGGcC-CGACg-- -3' miRNA: 3'- -AGGGCc-----UGCGCCGCUCaGaGCUGaag -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 145317 | 0.67 | 0.8502 |
Target: 5'- -aCCGGcGCGCGGCGGGcggcgCUCGGg--- -3' miRNA: 3'- agGGCC-UGCGCCGCUCa----GAGCUgaag -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 126647 | 0.67 | 0.8502 |
Target: 5'- gCCCGGACGCGcCGAGagacCGACg-- -3' miRNA: 3'- aGGGCCUGCGCcGCUCaga-GCUGaag -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 44706 | 0.67 | 0.8502 |
Target: 5'- gCCCGGccgcgacCGCGGCGAcGUCggcCGGCg-- -3' miRNA: 3'- aGGGCCu------GCGCCGCU-CAGa--GCUGaag -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 107876 | 0.67 | 0.842514 |
Target: 5'- aUCgCGGaggcgGCGCGGCGGGUg-CGGCUg- -3' miRNA: 3'- -AGgGCC-----UGCGCCGCUCAgaGCUGAag -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 30080 | 0.67 | 0.842514 |
Target: 5'- gCCCGGucgacgaggcGCGCGGCcGGUCcCGACc-- -3' miRNA: 3'- aGGGCC----------UGCGCCGcUCAGaGCUGaag -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 64843 | 0.67 | 0.82662 |
Target: 5'- -aCCGGacgGCGCGGCGGcacCUCGACg-- -3' miRNA: 3'- agGGCC---UGCGCCGCUca-GAGCUGaag -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 117291 | 0.67 | 0.818426 |
Target: 5'- gCgCGGACagcuGCGGCGuGUCgagCGACUg- -3' miRNA: 3'- aGgGCCUG----CGCCGCuCAGa--GCUGAag -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 50732 | 0.66 | 0.892301 |
Target: 5'- gCCCGGG-GCGGCc-GcCUCGACUcgcUCg -3' miRNA: 3'- aGGGCCUgCGCCGcuCaGAGCUGA---AG- -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 15038 | 0.66 | 0.879065 |
Target: 5'- uUCCUGGugcuguucauCGCGGUcaucGGUCUCGGCcUCu -3' miRNA: 3'- -AGGGCCu---------GCGCCGc---UCAGAGCUGaAG- -5' |
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10707 | 5' | -58.3 | NC_002794.1 | + | 123766 | 0.66 | 0.879065 |
Target: 5'- uUCCCGGGCGUGGaCGccUC-CGugUUg -3' miRNA: 3'- -AGGGCCUGCGCC-GCucAGaGCugAAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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