miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10707 5' -58.3 NC_002794.1 + 126647 0.67 0.8502
Target:  5'- gCCCGGACGCGcCGAGagacCGACg-- -3'
miRNA:   3'- aGGGCCUGCGCcGCUCaga-GCUGaag -5'
10707 5' -58.3 NC_002794.1 + 128334 0.71 0.612491
Target:  5'- gCCCGGACGCGGUggacuGAGcagUCGACUc- -3'
miRNA:   3'- aGGGCCUGCGCCG-----CUCag-AGCUGAag -5'
10707 5' -58.3 NC_002794.1 + 131558 0.7 0.671359
Target:  5'- gCCCGuggucGGCGCGGCGcccGUCUUGACg-- -3'
miRNA:   3'- aGGGC-----CUGCGCCGCu--CAGAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 136884 0.66 0.879065
Target:  5'- aUCUGGACGUGGagcaGGGaUUCGAgUUCg -3'
miRNA:   3'- aGGGCCUGCGCCg---CUCaGAGCUgAAG- -5'
10707 5' -58.3 NC_002794.1 + 138437 0.71 0.622309
Target:  5'- gCCgCGGugGCGGCGGcGcCUCGGCc-- -3'
miRNA:   3'- aGG-GCCugCGCCGCU-CaGAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 138677 0.66 0.892301
Target:  5'- gUCUGcGugGCGGCGGGUCgUGAUg-- -3'
miRNA:   3'- aGGGC-CugCGCCGCUCAGaGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 143119 0.67 0.842514
Target:  5'- gCUCGGcCGUGGCGcaGGUCUCGGg--- -3'
miRNA:   3'- aGGGCCuGCGCCGC--UCAGAGCUgaag -5'
10707 5' -58.3 NC_002794.1 + 145317 0.67 0.8502
Target:  5'- -aCCGGcGCGCGGCGGGcggcgCUCGGg--- -3'
miRNA:   3'- agGGCC-UGCGCCGCUCa----GAGCUgaag -5'
10707 5' -58.3 NC_002794.1 + 145611 0.66 0.879065
Target:  5'- -gUCGGGCGCGaCGAGgagCUCGGCc-- -3'
miRNA:   3'- agGGCCUGCGCcGCUCa--GAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 146230 0.68 0.77526
Target:  5'- cUCCuCGGuCGCGGCGucgucaucGUCgUCGACcUCg -3'
miRNA:   3'- -AGG-GCCuGCGCCGCu-------CAG-AGCUGaAG- -5'
10707 5' -58.3 NC_002794.1 + 147771 0.68 0.766242
Target:  5'- aUCCUGagcGACGCGGCGAcccugggcGUCUCGgaGCUg- -3'
miRNA:   3'- -AGGGC---CUGCGCCGCU--------CAGAGC--UGAag -5'
10707 5' -58.3 NC_002794.1 + 147858 0.66 0.898605
Target:  5'- aUCCUGGGCGuCGucGCGcAGUcCUCGGCg-- -3'
miRNA:   3'- -AGGGCCUGC-GC--CGC-UCA-GAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 153086 0.66 0.871438
Target:  5'- gCUCGccagacuGACGCGccGCcuacgGGGUCUCGACUUCg -3'
miRNA:   3'- aGGGC-------CUGCGC--CG-----CUCAGAGCUGAAG- -5'
10707 5' -58.3 NC_002794.1 + 180691 0.68 0.810075
Target:  5'- cUCCCGG-CGCccGGCGGGcggaccauggCUCGGgUUCa -3'
miRNA:   3'- -AGGGCCuGCG--CCGCUCa---------GAGCUgAAG- -5'
10707 5' -58.3 NC_002794.1 + 180867 0.69 0.754356
Target:  5'- -gUCGGAgGCGGCGgauccggcgcgcccGGUCUCGGCcgCg -3'
miRNA:   3'- agGGCCUgCGCCGC--------------UCAGAGCUGaaG- -5'
10707 5' -58.3 NC_002794.1 + 185173 0.66 0.871438
Target:  5'- -gCCGG-CGCGGCGcGGUCggcgcggUCGGCgcggUCa -3'
miRNA:   3'- agGGCCuGCGCCGC-UCAG-------AGCUGa---AG- -5'
10707 5' -58.3 NC_002794.1 + 188041 1.1 0.002204
Target:  5'- gUCCCGGACGCGGCGAGUCUCGACUUCg -3'
miRNA:   3'- -AGGGCCUGCGCCGCUCAGAGCUGAAG- -5'
10707 5' -58.3 NC_002794.1 + 195124 0.66 0.872141
Target:  5'- gCCCGcGGCGCGcGCGGG-CUCG-Cg-- -3'
miRNA:   3'- aGGGC-CUGCGC-CGCUCaGAGCuGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.