miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10707 5' -58.3 NC_002794.1 + 138677 0.66 0.892301
Target:  5'- gUCUGcGugGCGGCGGGUCgUGAUg-- -3'
miRNA:   3'- aGGGC-CugCGCCGCUCAGaGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 70305 0.66 0.892301
Target:  5'- gCCCGGGCGCGaaGAG-C-CG-CUUCg -3'
miRNA:   3'- aGGGCCUGCGCcgCUCaGaGCuGAAG- -5'
10707 5' -58.3 NC_002794.1 + 123766 0.66 0.879065
Target:  5'- uUCCCGGGCGUGGaCGccUC-CGugUUg -3'
miRNA:   3'- -AGGGCCUGCGCC-GCucAGaGCugAAg -5'
10707 5' -58.3 NC_002794.1 + 15038 0.66 0.879065
Target:  5'- uUCCUGGugcuguucauCGCGGUcaucGGUCUCGGCcUCu -3'
miRNA:   3'- -AGGGCCu---------GCGCCGc---UCAGAGCUGaAG- -5'
10707 5' -58.3 NC_002794.1 + 195124 0.66 0.872141
Target:  5'- gCCCGcGGCGCGcGCGGG-CUCG-Cg-- -3'
miRNA:   3'- aGGGC-CUGCGC-CGCUCaGAGCuGaag -5'
10707 5' -58.3 NC_002794.1 + 23714 0.67 0.834652
Target:  5'- gUCCCGaaccgcGCGCGGCGGGcC-CGACg-- -3'
miRNA:   3'- -AGGGCc-----UGCGCCGCUCaGaGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 64843 0.67 0.82662
Target:  5'- -aCCGGacgGCGCGGCGGcacCUCGACg-- -3'
miRNA:   3'- agGGCC---UGCGCCGCUca-GAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 30080 0.67 0.842514
Target:  5'- gCCCGGucgacgaggcGCGCGGCcGGUCcCGACc-- -3'
miRNA:   3'- aGGGCC----------UGCGCCGcUCAGaGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 107876 0.67 0.842514
Target:  5'- aUCgCGGaggcgGCGCGGCGGGUg-CGGCUg- -3'
miRNA:   3'- -AGgGCC-----UGCGCCGCUCAgaGCUGAag -5'
10707 5' -58.3 NC_002794.1 + 44706 0.67 0.8502
Target:  5'- gCCCGGccgcgacCGCGGCGAcGUCggcCGGCg-- -3'
miRNA:   3'- aGGGCCu------GCGCCGCU-CAGa--GCUGaag -5'
10707 5' -58.3 NC_002794.1 + 126647 0.67 0.8502
Target:  5'- gCCCGGACGCGcCGAGagacCGACg-- -3'
miRNA:   3'- aGGGCCUGCGCcGCUCaga-GCUGaag -5'
10707 5' -58.3 NC_002794.1 + 145317 0.67 0.8502
Target:  5'- -aCCGGcGCGCGGCGGGcggcgCUCGGg--- -3'
miRNA:   3'- agGGCC-UGCGCCGCUCa----GAGCUgaag -5'
10707 5' -58.3 NC_002794.1 + 116378 0.66 0.865019
Target:  5'- -gUCGGugGCGuGCGGGUCgaaGACg-- -3'
miRNA:   3'- agGGCCugCGC-CGCUCAGag-CUGaag -5'
10707 5' -58.3 NC_002794.1 + 121507 0.66 0.864296
Target:  5'- gCCgGGGCGacgacguccgaacCGGCGGucGUCUCGACg-- -3'
miRNA:   3'- aGGgCCUGC-------------GCCGCU--CAGAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 153086 0.66 0.871438
Target:  5'- gCUCGccagacuGACGCGccGCcuacgGGGUCUCGACUUCg -3'
miRNA:   3'- aGGGC-------CUGCGC--CG-----CUCAGAGCUGAAG- -5'
10707 5' -58.3 NC_002794.1 + 185173 0.66 0.871438
Target:  5'- -gCCGG-CGCGGCGcGGUCggcgcggUCGGCgcggUCa -3'
miRNA:   3'- agGGCCuGCGCCGC-UCAG-------AGCUGa---AG- -5'
10707 5' -58.3 NC_002794.1 + 53846 0.66 0.872141
Target:  5'- --aCGGGCGUcucGGCGGGguUCUCGACg-- -3'
miRNA:   3'- aggGCCUGCG---CCGCUC--AGAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 66840 0.66 0.892301
Target:  5'- cUCCGGgcgccgccgucgGCGCGGCGAGgccgCGGCg-- -3'
miRNA:   3'- aGGGCC------------UGCGCCGCUCaga-GCUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.