miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10707 5' -58.3 NC_002794.1 + 121507 0.66 0.864296
Target:  5'- gCCgGGGCGacgacguccgaacCGGCGGucGUCUCGACg-- -3'
miRNA:   3'- aGGgCCUGC-------------GCCGCU--CAGAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 145317 0.67 0.8502
Target:  5'- -aCCGGcGCGCGGCGGGcggcgCUCGGg--- -3'
miRNA:   3'- agGGCC-UGCGCCGCUCa----GAGCUgaag -5'
10707 5' -58.3 NC_002794.1 + 126647 0.67 0.8502
Target:  5'- gCCCGGACGCGcCGAGagacCGACg-- -3'
miRNA:   3'- aGGGCCUGCGCcGCUCaga-GCUGaag -5'
10707 5' -58.3 NC_002794.1 + 44706 0.67 0.8502
Target:  5'- gCCCGGccgcgacCGCGGCGAcGUCggcCGGCg-- -3'
miRNA:   3'- aGGGCCu------GCGCCGCU-CAGa--GCUGaag -5'
10707 5' -58.3 NC_002794.1 + 143119 0.67 0.842514
Target:  5'- gCUCGGcCGUGGCGcaGGUCUCGGg--- -3'
miRNA:   3'- aGGGCCuGCGCCGC--UCAGAGCUgaag -5'
10707 5' -58.3 NC_002794.1 + 30080 0.67 0.842514
Target:  5'- gCCCGGucgacgaggcGCGCGGCcGGUCcCGACc-- -3'
miRNA:   3'- aGGGCC----------UGCGCCGcUCAGaGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 107876 0.67 0.842514
Target:  5'- aUCgCGGaggcgGCGCGGCGGGUg-CGGCUg- -3'
miRNA:   3'- -AGgGCC-----UGCGCCGCUCAgaGCUGAag -5'
10707 5' -58.3 NC_002794.1 + 23714 0.67 0.834652
Target:  5'- gUCCCGaaccgcGCGCGGCGGGcC-CGACg-- -3'
miRNA:   3'- -AGGGCc-----UGCGCCGCUCaGaGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 64843 0.67 0.82662
Target:  5'- -aCCGGacgGCGCGGCGGcacCUCGACg-- -3'
miRNA:   3'- agGGCC---UGCGCCGCUca-GAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 38599 0.67 0.824994
Target:  5'- cUCCCGGACGagaggccggacgGGCGcGUCcCGACUc- -3'
miRNA:   3'- -AGGGCCUGCg-----------CCGCuCAGaGCUGAag -5'
10707 5' -58.3 NC_002794.1 + 117291 0.67 0.818426
Target:  5'- gCgCGGACagcuGCGGCGuGUCgagCGACUg- -3'
miRNA:   3'- aGgGCCUG----CGCCGCuCAGa--GCUGAag -5'
10707 5' -58.3 NC_002794.1 + 78996 0.68 0.810075
Target:  5'- cUCCCGGAguCGCGGCGAcUCcaucccgcccUCGGCc-- -3'
miRNA:   3'- -AGGGCCU--GCGCCGCUcAG----------AGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 180691 0.68 0.810075
Target:  5'- cUCCCGG-CGCccGGCGGGcggaccauggCUCGGgUUCa -3'
miRNA:   3'- -AGGGCCuGCG--CCGCUCa---------GAGCUgAAG- -5'
10707 5' -58.3 NC_002794.1 + 49475 0.68 0.810075
Target:  5'- -aCCGGcCGCcGCGGGUCugUCGACcUCg -3'
miRNA:   3'- agGGCCuGCGcCGCUCAG--AGCUGaAG- -5'
10707 5' -58.3 NC_002794.1 + 35646 0.68 0.801576
Target:  5'- aCCCGGgACG-GGCGcccGGUCUcCGACguggUCa -3'
miRNA:   3'- aGGGCC-UGCgCCGC---UCAGA-GCUGa---AG- -5'
10707 5' -58.3 NC_002794.1 + 64813 0.68 0.801576
Target:  5'- gCCgCGGACgGCGGCGAG-C-CGGCg-- -3'
miRNA:   3'- aGG-GCCUG-CGCCGCUCaGaGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 554 0.68 0.792935
Target:  5'- gCCCGGccucgGCGCGGCGguggcaGGUCUCG-UUUa -3'
miRNA:   3'- aGGGCC-----UGCGCCGC------UCAGAGCuGAAg -5'
10707 5' -58.3 NC_002794.1 + 146230 0.68 0.77526
Target:  5'- cUCCuCGGuCGCGGCGucgucaucGUCgUCGACcUCg -3'
miRNA:   3'- -AGG-GCCuGCGCCGCu-------CAG-AGCUGaAG- -5'
10707 5' -58.3 NC_002794.1 + 81978 0.68 0.77526
Target:  5'- uUCCCGGACGCG-CGAccGUUgcccgUCGACg-- -3'
miRNA:   3'- -AGGGCCUGCGCcGCU--CAG-----AGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 147771 0.68 0.766242
Target:  5'- aUCCUGagcGACGCGGCGAcccugggcGUCUCGgaGCUg- -3'
miRNA:   3'- -AGGGC---CUGCGCCGCU--------CAGAGC--UGAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.