miRNA display CGI


Results 41 - 60 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 86303 0.66 0.832897
Target:  5'- uCCGGCccgAgCCCGACCGgaugCUCCGGaccgagcCGGg -3'
miRNA:   3'- uGGUCG---UgGGGCUGGUa---GAGGUC-------GCC- -5'
10708 3' -59.6 NC_002794.1 + 86615 0.66 0.832897
Target:  5'- uCCGGCucgAgCCCGACCGgaugCUCCGGaccgagcCGGg -3'
miRNA:   3'- uGGUCG---UgGGGCUGGUa---GAGGUC-------GCC- -5'
10708 3' -59.6 NC_002794.1 + 116939 0.66 0.833692
Target:  5'- gUCGGCGuCCCCGGCgG-CggcgUCGGCGGg -3'
miRNA:   3'- uGGUCGU-GGGGCUGgUaGa---GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 114806 0.66 0.833692
Target:  5'- -gCAGguCCCgGAggcCCGcgcgcUCUCCGGCGGc -3'
miRNA:   3'- ugGUCguGGGgCU---GGU-----AGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 26639 0.66 0.833692
Target:  5'- uCCGcGCACCCggacggCGGCCggCUCguCGGCGGg -3'
miRNA:   3'- uGGU-CGUGGG------GCUGGuaGAG--GUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 11859 0.66 0.833692
Target:  5'- cGCCGGCGacgaccgcccgcCCCgCGACgGgucCUCgAGCGGg -3'
miRNA:   3'- -UGGUCGU------------GGG-GCUGgUa--GAGgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 68379 0.66 0.833692
Target:  5'- cGCC-GCcCCCCGACCugCUCC-GCGa -3'
miRNA:   3'- -UGGuCGuGGGGCUGGuaGAGGuCGCc -5'
10708 3' -59.6 NC_002794.1 + 107515 0.66 0.833692
Target:  5'- uGCCGGUcgacGCCgaCGGCCGgcgCggcgCCGGCGGc -3'
miRNA:   3'- -UGGUCG----UGGg-GCUGGUa--Ga---GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 71963 0.66 0.833692
Target:  5'- uACCGGCGCaUCaGCCgGUC-CCGGCGGa -3'
miRNA:   3'- -UGGUCGUGgGGcUGG-UAGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 116311 0.66 0.833692
Target:  5'- aGCCcgagAGCACCgCGAUCAccUCgUCCAGCu- -3'
miRNA:   3'- -UGG----UCGUGGgGCUGGU--AG-AGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 64318 0.67 0.792034
Target:  5'- cGCCAcCACCCCgGGCCGUUUuuGGCc- -3'
miRNA:   3'- -UGGUcGUGGGG-CUGGUAGAggUCGcc -5'
10708 3' -59.6 NC_002794.1 + 112266 0.67 0.792034
Target:  5'- gACCGGCGucucguCCUCGGCCuccGUgUCgGGCGGc -3'
miRNA:   3'- -UGGUCGU------GGGGCUGG---UAgAGgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 53767 0.67 0.783277
Target:  5'- uGCCGGCggcgggacGCCCgCGACgCG-C-CCGGCGGg -3'
miRNA:   3'- -UGGUCG--------UGGG-GCUG-GUaGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 189399 0.67 0.783277
Target:  5'- gGCCAcGUAgUCCG-CCAgggCCAGCGGg -3'
miRNA:   3'- -UGGU-CGUgGGGCuGGUagaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 40832 0.67 0.792034
Target:  5'- gACCGguGCGCCugCCGACCucgcgCUCcCAGCGa -3'
miRNA:   3'- -UGGU--CGUGG--GGCUGGua---GAG-GUCGCc -5'
10708 3' -59.6 NC_002794.1 + 104275 0.67 0.792034
Target:  5'- gGCCGGCACCgugCCGAaCAggaUCUCgGGcCGGg -3'
miRNA:   3'- -UGGUCGUGG---GGCUgGU---AGAGgUC-GCC- -5'
10708 3' -59.6 NC_002794.1 + 85467 0.67 0.792034
Target:  5'- gGCCGGCG-CCCGGCC---UCCGGCc- -3'
miRNA:   3'- -UGGUCGUgGGGCUGGuagAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 65364 0.67 0.792034
Target:  5'- cGCCGGCGCCCUGACgccacaCGGCGc -3'
miRNA:   3'- -UGGUCGUGGGGCUGguagagGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 131700 0.67 0.792034
Target:  5'- cCCAG-ACCCCGACCGgaccccgagagCgagCgAGCGGg -3'
miRNA:   3'- uGGUCgUGGGGCUGGUa----------Ga--GgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 71171 0.67 0.78942
Target:  5'- cACCAGCACCCCccggcggaacaggaGAUCGa--CCAGCGc -3'
miRNA:   3'- -UGGUCGUGGGG--------------CUGGUagaGGUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.