Results 61 - 80 of 185 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 184220 | 0.67 | 0.754458 |
Target: 5'- aACCAGCucccggcccaguUCCCGGCCcaggCUCCGGCc- -3' miRNA: 3'- -UGGUCGu-----------GGGGCUGGua--GAGGUCGcc -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 34283 | 0.67 | 0.747085 |
Target: 5'- gGCCAGCGCCagCGACCGggagCUCUA-CGa -3' miRNA: 3'- -UGGUCGUGGg-GCUGGUa---GAGGUcGCc -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 121793 | 0.67 | 0.747085 |
Target: 5'- cCCGGcCACCgCGACCGg--CCGGCGc -3' miRNA: 3'- uGGUC-GUGGgGCUGGUagaGGUCGCc -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 194833 | 0.67 | 0.747085 |
Target: 5'- cGCUcGCGgCCCGG-CGUCUCCAGCc- -3' miRNA: 3'- -UGGuCGUgGGGCUgGUAGAGGUCGcc -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 83133 | 0.67 | 0.765398 |
Target: 5'- cGCCAGUACUUCGACCgccugacgacgaGUCagCuGCGGa -3' miRNA: 3'- -UGGUCGUGGGGCUGG------------UAGagGuCGCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 183443 | 0.67 | 0.774395 |
Target: 5'- gACCGGCGCCC--GCCAcCgCCGGCGc -3' miRNA: 3'- -UGGUCGUGGGgcUGGUaGaGGUCGCc -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 101536 | 0.67 | 0.774395 |
Target: 5'- cCCGGCGCCacguuCCGaacGCCGUUccgaacgCCGGCGGg -3' miRNA: 3'- uGGUCGUGG-----GGC---UGGUAGa------GGUCGCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 131700 | 0.67 | 0.792034 |
Target: 5'- cCCAG-ACCCCGACCGgaccccgagagCgagCgAGCGGg -3' miRNA: 3'- uGGUCgUGGGGCUGGUa----------Ga--GgUCGCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 65364 | 0.67 | 0.792034 |
Target: 5'- cGCCGGCGCCCUGACgccacaCGGCGc -3' miRNA: 3'- -UGGUCGUGGGGCUGguagagGUCGCc -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 85467 | 0.67 | 0.792034 |
Target: 5'- gGCCGGCG-CCCGGCC---UCCGGCc- -3' miRNA: 3'- -UGGUCGUgGGGCUGGuagAGGUCGcc -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 104275 | 0.67 | 0.792034 |
Target: 5'- gGCCGGCACCgugCCGAaCAggaUCUCgGGcCGGg -3' miRNA: 3'- -UGGUCGUGG---GGCUgGU---AGAGgUC-GCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 40832 | 0.67 | 0.792034 |
Target: 5'- gACCGguGCGCCugCCGACCucgcgCUCcCAGCGa -3' miRNA: 3'- -UGGU--CGUGG--GGCUGGua---GAG-GUCGCc -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 64318 | 0.67 | 0.792034 |
Target: 5'- cGCCAcCACCCCgGGCCGUUUuuGGCc- -3' miRNA: 3'- -UGGUcGUGGGG-CUGGUAGAggUCGcc -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 112266 | 0.67 | 0.792034 |
Target: 5'- gACCGGCGucucguCCUCGGCCuccGUgUCgGGCGGc -3' miRNA: 3'- -UGGUCGU------GGGGCUGG---UAgAGgUCGCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 53767 | 0.67 | 0.783277 |
Target: 5'- uGCCGGCggcgggacGCCCgCGACgCG-C-CCGGCGGg -3' miRNA: 3'- -UGGUCG--------UGGG-GCUG-GUaGaGGUCGCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 189399 | 0.67 | 0.783277 |
Target: 5'- gGCCAcGUAgUCCG-CCAgggCCAGCGGg -3' miRNA: 3'- -UGGU-CGUgGGGCuGGUagaGGUCGCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 71171 | 0.67 | 0.78942 |
Target: 5'- cACCAGCACCCCccggcggaacaggaGAUCGa--CCAGCGc -3' miRNA: 3'- -UGGUCGUGGGG--------------CUGGUagaGGUCGCc -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 108423 | 0.67 | 0.774395 |
Target: 5'- -aCGGCGCCCaccccgCGACCGgcggcaCUCgCGGCGGc -3' miRNA: 3'- ugGUCGUGGG------GCUGGUa-----GAG-GUCGCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 194311 | 0.67 | 0.774395 |
Target: 5'- cGCCAGCGCCugCCGcagcggaucgcGCCAcgggcUCUCCGaCGGg -3' miRNA: 3'- -UGGUCGUGG--GGC-----------UGGU-----AGAGGUcGCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 90957 | 0.67 | 0.774395 |
Target: 5'- cGCCGagGCCCgGGCCcgCUUCGGCGu -3' miRNA: 3'- -UGGUcgUGGGgCUGGuaGAGGUCGCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home