miRNA display CGI


Results 81 - 100 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 108423 0.67 0.774395
Target:  5'- -aCGGCGCCCaccccgCGACCGgcggcaCUCgCGGCGGc -3'
miRNA:   3'- ugGUCGUGGG------GCUGGUa-----GAG-GUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 71171 0.67 0.78942
Target:  5'- cACCAGCACCCCccggcggaacaggaGAUCGa--CCAGCGc -3'
miRNA:   3'- -UGGUCGUGGGG--------------CUGGUagaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 189399 0.67 0.783277
Target:  5'- gGCCAcGUAgUCCG-CCAgggCCAGCGGg -3'
miRNA:   3'- -UGGU-CGUgGGGCuGGUagaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 67564 0.68 0.718944
Target:  5'- cGCC-GCACCaaagCCGACCGg--UCGGCGGa -3'
miRNA:   3'- -UGGuCGUGG----GGCUGGUagaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 183620 0.68 0.718944
Target:  5'- gGCCGGCGCCCCcgcgcccCCGaCUCgAGCaGGg -3'
miRNA:   3'- -UGGUCGUGGGGcu-----GGUaGAGgUCG-CC- -5'
10708 3' -59.6 NC_002794.1 + 151899 0.68 0.717994
Target:  5'- uUCGGCGCCCCagagccuGGCCGagCUCCGucuGCGGc -3'
miRNA:   3'- uGGUCGUGGGG-------CUGGUa-GAGGU---CGCC- -5'
10708 3' -59.6 NC_002794.1 + 125350 0.68 0.709417
Target:  5'- cACCGGCAgCCgCUGGCCGUCagcaaCAGCGu -3'
miRNA:   3'- -UGGUCGU-GG-GGCUGGUAGag---GUCGCc -5'
10708 3' -59.6 NC_002794.1 + 190520 0.68 0.709417
Target:  5'- cCCAGcCGCgugCCGAUCGUCguccaCCAGCGGu -3'
miRNA:   3'- uGGUC-GUGg--GGCUGGUAGa----GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 53314 0.68 0.709417
Target:  5'- gGCCGGCGCCgCGAgaucggcucgaaCCGcacCUCCGGCGc -3'
miRNA:   3'- -UGGUCGUGGgGCU------------GGUa--GAGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 104361 0.68 0.709417
Target:  5'- uGCCGGuCACgCCGACCugCUUCAGCa- -3'
miRNA:   3'- -UGGUC-GUGgGGCUGGuaGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 190815 0.68 0.722736
Target:  5'- cGCCAGCuCgUCGaaguugaagGCCAccagauacagcacgaUCUCCAGCGGg -3'
miRNA:   3'- -UGGUCGuGgGGC---------UGGU---------------AGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 120866 0.68 0.722736
Target:  5'- uCCAGCGCCUCGGCUgGUgUCCGaacggcgaggucaccGCGGg -3'
miRNA:   3'- uGGUCGUGGGGCUGG-UAgAGGU---------------CGCC- -5'
10708 3' -59.6 NC_002794.1 + 193803 0.68 0.72746
Target:  5'- cGCCGGCGCCcgcucgucuggcgCCGACgCGUCgcggcgCCGGCa- -3'
miRNA:   3'- -UGGUCGUGG-------------GGCUG-GUAGa-----GGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 73233 0.68 0.728403
Target:  5'- uACCGGCuCCUCGGCCA-CUCCGuCGu -3'
miRNA:   3'- -UGGUCGuGGGGCUGGUaGAGGUcGCc -5'
10708 3' -59.6 NC_002794.1 + 43802 0.68 0.728403
Target:  5'- gACCcGcCGCUCCGGgcCCAggcUCUCCAGCGa -3'
miRNA:   3'- -UGGuC-GUGGGGCU--GGU---AGAGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 119610 0.68 0.728403
Target:  5'- uCCAGCGCCUCGaggaacgucucgGCCGUCgUCAGCa- -3'
miRNA:   3'- uGGUCGUGGGGC------------UGGUAGaGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 152416 0.68 0.728403
Target:  5'- gACCuGCuGCCCCgGGCCGUCUgUCGGCa- -3'
miRNA:   3'- -UGGuCG-UGGGG-CUGGUAGA-GGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 83360 0.68 0.737786
Target:  5'- gGCCAGCcUCCCGugUcugCUCCAG-GGc -3'
miRNA:   3'- -UGGUCGuGGGGCugGua-GAGGUCgCC- -5'
10708 3' -59.6 NC_002794.1 + 38569 0.68 0.728403
Target:  5'- cGCCGGCGCCUcgacggaguCGGCCGcCUCCuccCGGa -3'
miRNA:   3'- -UGGUCGUGGG---------GCUGGUaGAGGuc-GCC- -5'
10708 3' -59.6 NC_002794.1 + 50822 0.68 0.709417
Target:  5'- uCCGGCGCCCCcGCC--CUCgGGCGu -3'
miRNA:   3'- uGGUCGUGGGGcUGGuaGAGgUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.