Results 101 - 120 of 185 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 16500 | 0.68 | 0.728403 |
Target: 5'- cGCCAcCGCCgCCG-CCGUCcCCGGCGu -3' miRNA: 3'- -UGGUcGUGG-GGCuGGUAGaGGUCGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 38569 | 0.68 | 0.728403 |
Target: 5'- cGCCGGCGCCUcgacggaguCGGCCGcCUCCuccCGGa -3' miRNA: 3'- -UGGUCGUGGG---------GCUGGUaGAGGuc-GCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 83360 | 0.68 | 0.737786 |
Target: 5'- gGCCAGCcUCCCGugUcugCUCCAG-GGc -3' miRNA: 3'- -UGGUCGuGGGGCugGua-GAGGUCgCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 152416 | 0.68 | 0.728403 |
Target: 5'- gACCuGCuGCCCCgGGCCGUCUgUCGGCa- -3' miRNA: 3'- -UGGuCG-UGGGG-CUGGUAGA-GGUCGcc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 119610 | 0.68 | 0.728403 |
Target: 5'- uCCAGCGCCUCGaggaacgucucgGCCGUCgUCAGCa- -3' miRNA: 3'- uGGUCGUGGGGC------------UGGUAGaGGUCGcc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 43802 | 0.68 | 0.728403 |
Target: 5'- gACCcGcCGCUCCGGgcCCAggcUCUCCAGCGa -3' miRNA: 3'- -UGGuC-GUGGGGCU--GGU---AGAGGUCGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 73233 | 0.68 | 0.728403 |
Target: 5'- uACCGGCuCCUCGGCCA-CUCCGuCGu -3' miRNA: 3'- -UGGUCGuGGGGCUGGUaGAGGUcGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 193803 | 0.68 | 0.72746 |
Target: 5'- cGCCGGCGCCcgcucgucuggcgCCGACgCGUCgcggcgCCGGCa- -3' miRNA: 3'- -UGGUCGUGG-------------GGCUG-GUAGa-----GGUCGcc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 120866 | 0.68 | 0.722736 |
Target: 5'- uCCAGCGCCUCGGCUgGUgUCCGaacggcgaggucaccGCGGg -3' miRNA: 3'- uGGUCGUGGGGCUGG-UAgAGGU---------------CGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 190815 | 0.68 | 0.722736 |
Target: 5'- cGCCAGCuCgUCGaaguugaagGCCAccagauacagcacgaUCUCCAGCGGg -3' miRNA: 3'- -UGGUCGuGgGGC---------UGGU---------------AGAGGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 67564 | 0.68 | 0.718944 |
Target: 5'- cGCC-GCACCaaagCCGACCGg--UCGGCGGa -3' miRNA: 3'- -UGGuCGUGG----GGCUGGUagaGGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 183620 | 0.68 | 0.718944 |
Target: 5'- gGCCGGCGCCCCcgcgcccCCGaCUCgAGCaGGg -3' miRNA: 3'- -UGGUCGUGGGGcu-----GGUaGAGgUCG-CC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 151899 | 0.68 | 0.717994 |
Target: 5'- uUCGGCGCCCCagagccuGGCCGagCUCCGucuGCGGc -3' miRNA: 3'- uGGUCGUGGGG-------CUGGUa-GAGGU---CGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 125350 | 0.68 | 0.709417 |
Target: 5'- cACCGGCAgCCgCUGGCCGUCagcaaCAGCGu -3' miRNA: 3'- -UGGUCGU-GG-GGCUGGUAGag---GUCGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 190520 | 0.68 | 0.709417 |
Target: 5'- cCCAGcCGCgugCCGAUCGUCguccaCCAGCGGu -3' miRNA: 3'- uGGUC-GUGg--GGCUGGUAGa----GGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 59967 | 0.69 | 0.677594 |
Target: 5'- uACCGGCACCCCGAggucgaCCGcuggcugcgccaguUCaCCGGCGc -3' miRNA: 3'- -UGGUCGUGGGGCU------GGU--------------AGaGGUCGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 60644 | 0.69 | 0.680507 |
Target: 5'- cGCCGGCGgCgCCGGCCA-C-CCGGCGc -3' miRNA: 3'- -UGGUCGUgG-GGCUGGUaGaGGUCGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 80440 | 0.69 | 0.680507 |
Target: 5'- cGCCGGCgGCCgCCGGCCcg--UCGGCGGc -3' miRNA: 3'- -UGGUCG-UGG-GGCUGGuagaGGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 188340 | 0.69 | 0.680507 |
Target: 5'- cGCCGGCGgCgCCGucgcgcCCGUCcggCCGGCGGc -3' miRNA: 3'- -UGGUCGUgG-GGCu-----GGUAGa--GGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 17979 | 0.69 | 0.670787 |
Target: 5'- aGCCuGGCGCCCaCGGCCg---CCGGCGa -3' miRNA: 3'- -UGG-UCGUGGG-GCUGGuagaGGUCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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