Results 81 - 100 of 185 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 125350 | 0.68 | 0.709417 |
Target: 5'- cACCGGCAgCCgCUGGCCGUCagcaaCAGCGu -3' miRNA: 3'- -UGGUCGU-GG-GGCUGGUAGag---GUCGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 190815 | 0.68 | 0.722736 |
Target: 5'- cGCCAGCuCgUCGaaguugaagGCCAccagauacagcacgaUCUCCAGCGGg -3' miRNA: 3'- -UGGUCGuGgGGC---------UGGU---------------AGAGGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 67564 | 0.68 | 0.718944 |
Target: 5'- cGCC-GCACCaaagCCGACCGg--UCGGCGGa -3' miRNA: 3'- -UGGuCGUGG----GGCUGGUagaGGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 183620 | 0.68 | 0.718944 |
Target: 5'- gGCCGGCGCCCCcgcgcccCCGaCUCgAGCaGGg -3' miRNA: 3'- -UGGUCGUGGGGcu-----GGUaGAGgUCG-CC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 83360 | 0.68 | 0.737786 |
Target: 5'- gGCCAGCcUCCCGugUcugCUCCAG-GGc -3' miRNA: 3'- -UGGUCGuGGGGCugGua-GAGGUCgCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 38569 | 0.68 | 0.728403 |
Target: 5'- cGCCGGCGCCUcgacggaguCGGCCGcCUCCuccCGGa -3' miRNA: 3'- -UGGUCGUGGG---------GCUGGUaGAGGuc-GCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 35702 | 0.68 | 0.698868 |
Target: 5'- cCCGGCcuucuacAUCCCGAuCCAccuggcCUCCGGCGGc -3' miRNA: 3'- uGGUCG-------UGGGGCU-GGUa-----GAGGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 18567 | 0.68 | 0.699829 |
Target: 5'- gACC-GUGCCCgCGACCGUCUCgAcGaCGGa -3' miRNA: 3'- -UGGuCGUGGG-GCUGGUAGAGgU-C-GCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 130641 | 0.68 | 0.696943 |
Target: 5'- cGCCGGCccgcccgccgccccGCCgCCGGCCGcgggCUCCGccGCGGc -3' miRNA: 3'- -UGGUCG--------------UGG-GGCUGGUa---GAGGU--CGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 180682 | 0.68 | 0.69019 |
Target: 5'- cGCCGGcCGCuCCCGGCg--C-CCGGCGGg -3' miRNA: 3'- -UGGUC-GUG-GGGCUGguaGaGGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 107187 | 0.68 | 0.689224 |
Target: 5'- aGCCGGCGCCgccgccgCCGGCCucgC-CCGGCGc -3' miRNA: 3'- -UGGUCGUGG-------GGCUGGua-GaGGUCGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 36832 | 0.68 | 0.69019 |
Target: 5'- uCCAG-GCCCCgGACCGUCUCguagguguGCGGa -3' miRNA: 3'- uGGUCgUGGGG-CUGGUAGAGgu------CGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 12913 | 0.68 | 0.699829 |
Target: 5'- gGCCgAGUACCgCCuGGCCGUCgacgacCUGGCGGa -3' miRNA: 3'- -UGG-UCGUGG-GG-CUGGUAGa-----GGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 181137 | 0.68 | 0.699829 |
Target: 5'- cACCAGCGCUUCuuCCGcCUCCAGCc- -3' miRNA: 3'- -UGGUCGUGGGGcuGGUaGAGGUCGcc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 82642 | 0.68 | 0.689224 |
Target: 5'- cGCCGGCGCCagaagcgccgcgcUCGACgCcgCgCCGGCGGa -3' miRNA: 3'- -UGGUCGUGG-------------GGCUG-GuaGaGGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 136702 | 0.68 | 0.699829 |
Target: 5'- uCCAGCGCCCgGugCAggcgccggUC-CCGGCGu -3' miRNA: 3'- uGGUCGUGGGgCugGU--------AGaGGUCGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 74404 | 0.68 | 0.699829 |
Target: 5'- gACCgAGCGCCUCGACgAgcUCUUCGGCc- -3' miRNA: 3'- -UGG-UCGUGGGGCUGgU--AGAGGUCGcc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 192592 | 0.68 | 0.699829 |
Target: 5'- uCCAgGUACgCCGACCAcuucUCUCCGccagguGCGGa -3' miRNA: 3'- uGGU-CGUGgGGCUGGU----AGAGGU------CGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 60856 | 0.68 | 0.699829 |
Target: 5'- cGCCGGCgACCUCGGCCggCUCUcaaguacaucGGCGc -3' miRNA: 3'- -UGGUCG-UGGGGCUGGuaGAGG----------UCGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 16500 | 0.68 | 0.728403 |
Target: 5'- cGCCAcCGCCgCCG-CCGUCcCCGGCGu -3' miRNA: 3'- -UGGUcGUGG-GGCuGGUAGaGGUCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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