miRNA display CGI


Results 41 - 60 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 190733 0.71 0.563536
Target:  5'- gACgCAGCGCCCgCcGCCGUCUCgacgggggCGGCGGc -3'
miRNA:   3'- -UG-GUCGUGGG-GcUGGUAGAG--------GUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 90514 0.71 0.563536
Target:  5'- cGCCGcGCGCUUCGGCgcuCGUCUCC-GCGGg -3'
miRNA:   3'- -UGGU-CGUGGGGCUG---GUAGAGGuCGCC- -5'
10708 3' -59.6 NC_002794.1 + 94002 0.7 0.573188
Target:  5'- cGCCGGCGCCggcggcgggCCGGCgGguUCcgCCGGCGGg -3'
miRNA:   3'- -UGGUCGUGG---------GGCUGgU--AGa-GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 18647 0.7 0.582879
Target:  5'- cGCCGGCACCCgggaCGACCGUCgCC-GCu- -3'
miRNA:   3'- -UGGUCGUGGG----GCUGGUAGaGGuCGcc -5'
10708 3' -59.6 NC_002794.1 + 64829 0.7 0.582879
Target:  5'- aGCCGGCGCCgaCGACCGgacggCgCGGCGGc -3'
miRNA:   3'- -UGGUCGUGGg-GCUGGUaga--G-GUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 131162 0.7 0.592601
Target:  5'- cGCCAGCACggCGcCCGUCUCgAGcCGGa -3'
miRNA:   3'- -UGGUCGUGggGCuGGUAGAGgUC-GCC- -5'
10708 3' -59.6 NC_002794.1 + 43862 0.7 0.596498
Target:  5'- gGCCcggGGCACguagacggugagauaCCCGGCCGUCgCCGGCGu -3'
miRNA:   3'- -UGG---UCGUG---------------GGGCUGGUAGaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 13784 0.7 0.596498
Target:  5'- cCCGGgugGCUCCGGCCGUCUucgcgacgggcccggCCGGCGGc -3'
miRNA:   3'- uGGUCg--UGGGGCUGGUAGA---------------GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 83444 0.7 0.602351
Target:  5'- cACCGGCAUccaCCCGAagAUCUCCAaGgGGg -3'
miRNA:   3'- -UGGUCGUG---GGGCUggUAGAGGU-CgCC- -5'
10708 3' -59.6 NC_002794.1 + 71104 0.7 0.61212
Target:  5'- cGCCGGCGgCCUGGCCGgagaggcgCUCguucaucuccguCAGCGGg -3'
miRNA:   3'- -UGGUCGUgGGGCUGGUa-------GAG------------GUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 14652 0.7 0.61212
Target:  5'- cGCCGGCGCCgcggcgucgguCCGACUcgCggCGGCGGu -3'
miRNA:   3'- -UGGUCGUGG-----------GGCUGGuaGagGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 104774 0.69 0.641484
Target:  5'- cGCCGGCGCUCCGACacg--CCgacaGGCGGu -3'
miRNA:   3'- -UGGUCGUGGGGCUGguagaGG----UCGCC- -5'
10708 3' -59.6 NC_002794.1 + 17932 0.69 0.641484
Target:  5'- gGCCGGCuCCCCGACCuggCggCCAcccGCGa -3'
miRNA:   3'- -UGGUCGuGGGGCUGGua-Ga-GGU---CGCc -5'
10708 3' -59.6 NC_002794.1 + 64193 0.69 0.641484
Target:  5'- cGCU-GCAgCCCGACCAgua-CAGCGGg -3'
miRNA:   3'- -UGGuCGUgGGGCUGGUagagGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 70211 0.69 0.651268
Target:  5'- uCCAGCucGCCCgGACgGUCgggCgGGCGGc -3'
miRNA:   3'- uGGUCG--UGGGgCUGgUAGa--GgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 188026 0.69 0.651268
Target:  5'- cUCGGCGCCCUcGCCGUC-CCGgacGCGGc -3'
miRNA:   3'- uGGUCGUGGGGcUGGUAGaGGU---CGCC- -5'
10708 3' -59.6 NC_002794.1 + 44533 0.69 0.651268
Target:  5'- cGCgAGCGCgCCG-UCGUCgucgCCGGCGGc -3'
miRNA:   3'- -UGgUCGUGgGGCuGGUAGa---GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 189144 0.69 0.651268
Target:  5'- cGCCAGCGCCa-GAC--UCUCCcGCGGc -3'
miRNA:   3'- -UGGUCGUGGggCUGguAGAGGuCGCC- -5'
10708 3' -59.6 NC_002794.1 + 67849 0.69 0.659086
Target:  5'- cCCGGCGCCgCCGcgcgucacccggcGCCAUCccgaagcUCCgAGCGGa -3'
miRNA:   3'- uGGUCGUGG-GGC-------------UGGUAG-------AGG-UCGCC- -5'
10708 3' -59.6 NC_002794.1 + 180749 0.69 0.661038
Target:  5'- uCCGGCuCCUCGGCgG-CUUCGGCGGc -3'
miRNA:   3'- uGGUCGuGGGGCUGgUaGAGGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.