miRNA display CGI


Results 61 - 80 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 22932 0.69 0.661038
Target:  5'- aACCGGCACCCaucggcuGGCCGaCgggCCGGCGc -3'
miRNA:   3'- -UGGUCGUGGGg------CUGGUaGa--GGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 189495 0.69 0.661038
Target:  5'- cACCcagcugGGCACCUCGuguCCGUCgcggaUCAGCGGg -3'
miRNA:   3'- -UGG------UCGUGGGGCu--GGUAGa----GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 112322 0.69 0.661038
Target:  5'- cGCCgacggcggggAGCGCgCCGGCCggCggcgCCGGCGGc -3'
miRNA:   3'- -UGG----------UCGUGgGGCUGGuaGa---GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 68954 0.69 0.670787
Target:  5'- cGCCGGCGCCUCucCCucCUCC-GCGGg -3'
miRNA:   3'- -UGGUCGUGGGGcuGGuaGAGGuCGCC- -5'
10708 3' -59.6 NC_002794.1 + 17979 0.69 0.670787
Target:  5'- aGCCuGGCGCCCaCGGCCg---CCGGCGa -3'
miRNA:   3'- -UGG-UCGUGGG-GCUGGuagaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 59967 0.69 0.677594
Target:  5'- uACCGGCACCCCGAggucgaCCGcuggcugcgccaguUCaCCGGCGc -3'
miRNA:   3'- -UGGUCGUGGGGCU------GGU--------------AGaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 131261 0.69 0.680507
Target:  5'- cGCCGGCACCaCCGccggcACCAcCgCCGGCGc -3'
miRNA:   3'- -UGGUCGUGG-GGC-----UGGUaGaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 188340 0.69 0.680507
Target:  5'- cGCCGGCGgCgCCGucgcgcCCGUCcggCCGGCGGc -3'
miRNA:   3'- -UGGUCGUgG-GGCu-----GGUAGa--GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 80440 0.69 0.680507
Target:  5'- cGCCGGCgGCCgCCGGCCcg--UCGGCGGc -3'
miRNA:   3'- -UGGUCG-UGG-GGCUGGuagaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 60644 0.69 0.680507
Target:  5'- cGCCGGCGgCgCCGGCCA-C-CCGGCGc -3'
miRNA:   3'- -UGGUCGUgG-GGCUGGUaGaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 107187 0.68 0.689224
Target:  5'- aGCCGGCGCCgccgccgCCGGCCucgC-CCGGCGc -3'
miRNA:   3'- -UGGUCGUGG-------GGCUGGua-GaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 82642 0.68 0.689224
Target:  5'- cGCCGGCGCCagaagcgccgcgcUCGACgCcgCgCCGGCGGa -3'
miRNA:   3'- -UGGUCGUGG-------------GGCUG-GuaGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 180682 0.68 0.69019
Target:  5'- cGCCGGcCGCuCCCGGCg--C-CCGGCGGg -3'
miRNA:   3'- -UGGUC-GUG-GGGCUGguaGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 36832 0.68 0.69019
Target:  5'- uCCAG-GCCCCgGACCGUCUCguagguguGCGGa -3'
miRNA:   3'- uGGUCgUGGGG-CUGGUAGAGgu------CGCC- -5'
10708 3' -59.6 NC_002794.1 + 130641 0.68 0.696943
Target:  5'- cGCCGGCccgcccgccgccccGCCgCCGGCCGcgggCUCCGccGCGGc -3'
miRNA:   3'- -UGGUCG--------------UGG-GGCUGGUa---GAGGU--CGCC- -5'
10708 3' -59.6 NC_002794.1 + 35702 0.68 0.698868
Target:  5'- cCCGGCcuucuacAUCCCGAuCCAccuggcCUCCGGCGGc -3'
miRNA:   3'- uGGUCG-------UGGGGCU-GGUa-----GAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 74404 0.68 0.699829
Target:  5'- gACCgAGCGCCUCGACgAgcUCUUCGGCc- -3'
miRNA:   3'- -UGG-UCGUGGGGCUGgU--AGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 136702 0.68 0.699829
Target:  5'- uCCAGCGCCCgGugCAggcgccggUC-CCGGCGu -3'
miRNA:   3'- uGGUCGUGGGgCugGU--------AGaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 181137 0.68 0.699829
Target:  5'- cACCAGCGCUUCuuCCGcCUCCAGCc- -3'
miRNA:   3'- -UGGUCGUGGGGcuGGUaGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 192592 0.68 0.699829
Target:  5'- uCCAgGUACgCCGACCAcuucUCUCCGccagguGCGGa -3'
miRNA:   3'- uGGU-CGUGgGGCUGGU----AGAGGU------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.