Results 81 - 100 of 185 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 12913 | 0.68 | 0.699829 |
Target: 5'- gGCCgAGUACCgCCuGGCCGUCgacgacCUGGCGGa -3' miRNA: 3'- -UGG-UCGUGG-GG-CUGGUAGa-----GGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 136702 | 0.68 | 0.699829 |
Target: 5'- uCCAGCGCCCgGugCAggcgccggUC-CCGGCGu -3' miRNA: 3'- uGGUCGUGGGgCugGU--------AGaGGUCGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 18567 | 0.68 | 0.699829 |
Target: 5'- gACC-GUGCCCgCGACCGUCUCgAcGaCGGa -3' miRNA: 3'- -UGGuCGUGGG-GCUGGUAGAGgU-C-GCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 20208 | 0.68 | 0.70846 |
Target: 5'- cGCC-GCACCgCCGACCGccauggcUCUCC-GCGc -3' miRNA: 3'- -UGGuCGUGG-GGCUGGU-------AGAGGuCGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 50822 | 0.68 | 0.709417 |
Target: 5'- uCCGGCGCCCCcGCC--CUCgGGCGu -3' miRNA: 3'- uGGUCGUGGGGcUGGuaGAGgUCGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 125350 | 0.68 | 0.709417 |
Target: 5'- cACCGGCAgCCgCUGGCCGUCagcaaCAGCGu -3' miRNA: 3'- -UGGUCGU-GG-GGCUGGUAGag---GUCGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 190520 | 0.68 | 0.709417 |
Target: 5'- cCCAGcCGCgugCCGAUCGUCguccaCCAGCGGu -3' miRNA: 3'- uGGUC-GUGg--GGCUGGUAGa----GGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 53314 | 0.68 | 0.709417 |
Target: 5'- gGCCGGCGCCgCGAgaucggcucgaaCCGcacCUCCGGCGc -3' miRNA: 3'- -UGGUCGUGGgGCU------------GGUa--GAGGUCGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 104361 | 0.68 | 0.709417 |
Target: 5'- uGCCGGuCACgCCGACCugCUUCAGCa- -3' miRNA: 3'- -UGGUC-GUGgGGCUGGuaGAGGUCGcc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 151899 | 0.68 | 0.717994 |
Target: 5'- uUCGGCGCCCCagagccuGGCCGagCUCCGucuGCGGc -3' miRNA: 3'- uGGUCGUGGGG-------CUGGUa-GAGGU---CGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 67564 | 0.68 | 0.718944 |
Target: 5'- cGCC-GCACCaaagCCGACCGg--UCGGCGGa -3' miRNA: 3'- -UGGuCGUGG----GGCUGGUagaGGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 183620 | 0.68 | 0.718944 |
Target: 5'- gGCCGGCGCCCCcgcgcccCCGaCUCgAGCaGGg -3' miRNA: 3'- -UGGUCGUGGGGcu-----GGUaGAGgUCG-CC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 120866 | 0.68 | 0.722736 |
Target: 5'- uCCAGCGCCUCGGCUgGUgUCCGaacggcgaggucaccGCGGg -3' miRNA: 3'- uGGUCGUGGGGCUGG-UAgAGGU---------------CGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 190815 | 0.68 | 0.722736 |
Target: 5'- cGCCAGCuCgUCGaaguugaagGCCAccagauacagcacgaUCUCCAGCGGg -3' miRNA: 3'- -UGGUCGuGgGGC---------UGGU---------------AGAGGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 193803 | 0.68 | 0.72746 |
Target: 5'- cGCCGGCGCCcgcucgucuggcgCCGACgCGUCgcggcgCCGGCa- -3' miRNA: 3'- -UGGUCGUGG-------------GGCUG-GUAGa-----GGUCGcc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 73233 | 0.68 | 0.728403 |
Target: 5'- uACCGGCuCCUCGGCCA-CUCCGuCGu -3' miRNA: 3'- -UGGUCGuGGGGCUGGUaGAGGUcGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 119610 | 0.68 | 0.728403 |
Target: 5'- uCCAGCGCCUCGaggaacgucucgGCCGUCgUCAGCa- -3' miRNA: 3'- uGGUCGUGGGGC------------UGGUAGaGGUCGcc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 152416 | 0.68 | 0.728403 |
Target: 5'- gACCuGCuGCCCCgGGCCGUCUgUCGGCa- -3' miRNA: 3'- -UGGuCG-UGGGG-CUGGUAGA-GGUCGcc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 38569 | 0.68 | 0.728403 |
Target: 5'- cGCCGGCGCCUcgacggaguCGGCCGcCUCCuccCGGa -3' miRNA: 3'- -UGGUCGUGGG---------GCUGGUaGAGGuc-GCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 16500 | 0.68 | 0.728403 |
Target: 5'- cGCCAcCGCCgCCG-CCGUCcCCGGCGu -3' miRNA: 3'- -UGGUcGUGG-GGCuGGUAGaGGUCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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