miRNA display CGI


Results 61 - 80 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 53767 0.67 0.783277
Target:  5'- uGCCGGCggcgggacGCCCgCGACgCG-C-CCGGCGGg -3'
miRNA:   3'- -UGGUCG--------UGGG-GCUG-GUaGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 48060 0.67 0.774395
Target:  5'- gGCaCGGCGCUgaUGGCCGg--CCAGCGGg -3'
miRNA:   3'- -UG-GUCGUGGg-GCUGGUagaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 17669 0.67 0.774395
Target:  5'- cGCCAcCGCCgCCGGCC----CCGGCGGa -3'
miRNA:   3'- -UGGUcGUGG-GGCUGGuagaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 183443 0.67 0.774395
Target:  5'- gACCGGCGCCC--GCCAcCgCCGGCGc -3'
miRNA:   3'- -UGGUCGUGGGgcUGGUaGaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 101536 0.67 0.774395
Target:  5'- cCCGGCGCCacguuCCGaacGCCGUUccgaacgCCGGCGGg -3'
miRNA:   3'- uGGUCGUGG-----GGC---UGGUAGa------GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 90957 0.67 0.774395
Target:  5'- cGCCGagGCCCgGGCCcgCUUCGGCGu -3'
miRNA:   3'- -UGGUcgUGGGgCUGGuaGAGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 194311 0.67 0.774395
Target:  5'- cGCCAGCGCCugCCGcagcggaucgcGCCAcgggcUCUCCGaCGGg -3'
miRNA:   3'- -UGGUCGUGG--GGC-----------UGGU-----AGAGGUcGCC- -5'
10708 3' -59.6 NC_002794.1 + 108423 0.67 0.774395
Target:  5'- -aCGGCGCCCaccccgCGACCGgcggcaCUCgCGGCGGc -3'
miRNA:   3'- ugGUCGUGGG------GCUGGUa-----GAG-GUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 82188 0.67 0.774395
Target:  5'- aGCCcgGGCGCCCCGAgCG-C-CCGGCa- -3'
miRNA:   3'- -UGG--UCGUGGGGCUgGUaGaGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 47553 0.67 0.765398
Target:  5'- cACCAGCacgaGCUCCGACag-CUCCuGGCGc -3'
miRNA:   3'- -UGGUCG----UGGGGCUGguaGAGG-UCGCc -5'
10708 3' -59.6 NC_002794.1 + 83133 0.67 0.765398
Target:  5'- cGCCAGUACUUCGACCgccugacgacgaGUCagCuGCGGa -3'
miRNA:   3'- -UGGUCGUGGGGCUGG------------UAGagGuCGCC- -5'
10708 3' -59.6 NC_002794.1 + 114747 0.67 0.764492
Target:  5'- aGCCGGCGCCgCCcGCCGgcgccggUCcUCGGCGGc -3'
miRNA:   3'- -UGGUCGUGG-GGcUGGU-------AGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 186989 0.67 0.761768
Target:  5'- cACCAGCuCCgCCGGCUgcGUCgucagguacggcgUCAGCGGg -3'
miRNA:   3'- -UGGUCGuGG-GGCUGG--UAGa------------GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 194447 0.67 0.756292
Target:  5'- cCCGGcCGCUCCuuaaACCAguagccgcgCUCCAGCGGc -3'
miRNA:   3'- uGGUC-GUGGGGc---UGGUa--------GAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 193319 0.67 0.756292
Target:  5'- cACgCAGCG-CCCGAUCggUUCCAGgCGGu -3'
miRNA:   3'- -UG-GUCGUgGGGCUGGuaGAGGUC-GCC- -5'
10708 3' -59.6 NC_002794.1 + 77020 0.67 0.756292
Target:  5'- cGCCGgcGCACCUCGACCGcucguccccgcUCgugCC-GCGGa -3'
miRNA:   3'- -UGGU--CGUGGGGCUGGU-----------AGa--GGuCGCC- -5'
10708 3' -59.6 NC_002794.1 + 138416 0.67 0.756292
Target:  5'- cGCCGGC-CgCCGACuCGUCgagCC-GCGGu -3'
miRNA:   3'- -UGGUCGuGgGGCUG-GUAGa--GGuCGCC- -5'
10708 3' -59.6 NC_002794.1 + 184220 0.67 0.754458
Target:  5'- aACCAGCucccggcccaguUCCCGGCCcaggCUCCGGCc- -3'
miRNA:   3'- -UGGUCGu-----------GGGGCUGGua--GAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 121793 0.67 0.747085
Target:  5'- cCCGGcCACCgCGACCGg--CCGGCGc -3'
miRNA:   3'- uGGUC-GUGGgGCUGGUagaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 194833 0.67 0.747085
Target:  5'- cGCUcGCGgCCCGG-CGUCUCCAGCc- -3'
miRNA:   3'- -UGGuCGUgGGGCUgGUAGAGGUCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.