miRNA display CGI


Results 41 - 60 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 49256 0.66 0.809145
Target:  5'- cCCGcGCACCCaCGACgGgcgCUCCAaCGGc -3'
miRNA:   3'- uGGU-CGUGGG-GCUGgUa--GAGGUcGCC- -5'
10708 3' -59.6 NC_002794.1 + 50822 0.68 0.709417
Target:  5'- uCCGGCGCCCCcGCC--CUCgGGCGu -3'
miRNA:   3'- uGGUCGUGGGGcUGGuaGAGgUCGCc -5'
10708 3' -59.6 NC_002794.1 + 53195 0.66 0.841548
Target:  5'- aGCCgAGcCACCCgGACuCGUCgucgUCgAGCGGc -3'
miRNA:   3'- -UGG-UC-GUGGGgCUG-GUAG----AGgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 53314 0.68 0.709417
Target:  5'- gGCCGGCGCCgCGAgaucggcucgaaCCGcacCUCCGGCGc -3'
miRNA:   3'- -UGGUCGUGGgGCU------------GGUa--GAGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 53767 0.67 0.783277
Target:  5'- uGCCGGCggcgggacGCCCgCGACgCG-C-CCGGCGGg -3'
miRNA:   3'- -UGGUCG--------UGGG-GCUG-GUaGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 53981 0.76 0.304608
Target:  5'- uCCGGCuGCCCCGcGCCAgcgUCUCCAGCa- -3'
miRNA:   3'- uGGUCG-UGGGGC-UGGU---AGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 59967 0.69 0.677594
Target:  5'- uACCGGCACCCCGAggucgaCCGcuggcugcgccaguUCaCCGGCGc -3'
miRNA:   3'- -UGGUCGUGGGGCU------GGU--------------AGaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 60644 0.69 0.680507
Target:  5'- cGCCGGCGgCgCCGGCCA-C-CCGGCGc -3'
miRNA:   3'- -UGGUCGUgG-GGCUGGUaGaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 60856 0.68 0.699829
Target:  5'- cGCCGGCgACCUCGGCCggCUCUcaaguacaucGGCGc -3'
miRNA:   3'- -UGGUCG-UGGGGCUGGuaGAGG----------UCGCc -5'
10708 3' -59.6 NC_002794.1 + 61803 0.71 0.525418
Target:  5'- uCCcGU-CCCCGcUCAUCUCCGGCGGc -3'
miRNA:   3'- uGGuCGuGGGGCuGGUAGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 62740 0.66 0.800659
Target:  5'- cCCGcCGCCCgCGGCCGUCucgcUCCGGCu- -3'
miRNA:   3'- uGGUcGUGGG-GCUGGUAG----AGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 62790 0.66 0.817484
Target:  5'- cGCCuccGgGCCCCuACC-UCUCCGGCa- -3'
miRNA:   3'- -UGGu--CgUGGGGcUGGuAGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 64193 0.69 0.641484
Target:  5'- cGCU-GCAgCCCGACCAgua-CAGCGGg -3'
miRNA:   3'- -UGGuCGUgGGGCUGGUagagGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 64318 0.67 0.792034
Target:  5'- cGCCAcCACCCCgGGCCGUUUuuGGCc- -3'
miRNA:   3'- -UGGUcGUGGGG-CUGGUAGAggUCGcc -5'
10708 3' -59.6 NC_002794.1 + 64552 0.75 0.339653
Target:  5'- aACCAGCccguccACCUgGACCGcCUCCAGCGa -3'
miRNA:   3'- -UGGUCG------UGGGgCUGGUaGAGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 64829 0.7 0.582879
Target:  5'- aGCCGGCGCCgaCGACCGgacggCgCGGCGGc -3'
miRNA:   3'- -UGGUCGUGGg-GCUGGUaga--G-GUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 65364 0.67 0.792034
Target:  5'- cGCCGGCGCCCUGACgccacaCGGCGc -3'
miRNA:   3'- -UGGUCGUGGGGCUGguagagGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 65911 0.66 0.825669
Target:  5'- -----gACCuuGACCGUCgucgCCGGCGGc -3'
miRNA:   3'- uggucgUGGggCUGGUAGa---GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 66709 0.66 0.825669
Target:  5'- cGCC-GCGCCCggcaCGGCCGcCgccaccgCCGGCGGu -3'
miRNA:   3'- -UGGuCGUGGG----GCUGGUaGa------GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 66936 0.66 0.809145
Target:  5'- cGCCAcCGCCCCcgaGGCCcUCgaggCCGGCGa -3'
miRNA:   3'- -UGGUcGUGGGG---CUGGuAGa---GGUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.