Results 61 - 80 of 185 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 67564 | 0.68 | 0.718944 |
Target: 5'- cGCC-GCACCaaagCCGACCGg--UCGGCGGa -3' miRNA: 3'- -UGGuCGUGG----GGCUGGUagaGGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 67849 | 0.69 | 0.659086 |
Target: 5'- cCCGGCGCCgCCGcgcgucacccggcGCCAUCccgaagcUCCgAGCGGa -3' miRNA: 3'- uGGUCGUGG-GGC-------------UGGUAG-------AGG-UCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 68239 | 0.75 | 0.347003 |
Target: 5'- gACgCAGCGCCCCGACCuccccCUCCuGCa- -3' miRNA: 3'- -UG-GUCGUGGGGCUGGua---GAGGuCGcc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 68379 | 0.66 | 0.833692 |
Target: 5'- cGCC-GCcCCCCGACCugCUCC-GCGa -3' miRNA: 3'- -UGGuCGuGGGGCUGGuaGAGGuCGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 68954 | 0.69 | 0.670787 |
Target: 5'- cGCCGGCGCCUCucCCucCUCC-GCGGg -3' miRNA: 3'- -UGGUCGUGGGGcuGGuaGAGGuCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 70211 | 0.69 | 0.651268 |
Target: 5'- uCCAGCucGCCCgGACgGUCgggCgGGCGGc -3' miRNA: 3'- uGGUCG--UGGGgCUGgUAGa--GgUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 70476 | 0.66 | 0.836855 |
Target: 5'- aGCCAGCACCCgaugucggggcagggCGACCGaCaggagccggUCCAGCc- -3' miRNA: 3'- -UGGUCGUGGG---------------GCUGGUaG---------AGGUCGcc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 71104 | 0.7 | 0.61212 |
Target: 5'- cGCCGGCGgCCUGGCCGgagaggcgCUCguucaucuccguCAGCGGg -3' miRNA: 3'- -UGGUCGUgGGGCUGGUa-------GAG------------GUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 71171 | 0.67 | 0.78942 |
Target: 5'- cACCAGCACCCCccggcggaacaggaGAUCGa--CCAGCGc -3' miRNA: 3'- -UGGUCGUGGGG--------------CUGGUagaGGUCGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 71963 | 0.66 | 0.833692 |
Target: 5'- uACCGGCGCaUCaGCCgGUC-CCGGCGGa -3' miRNA: 3'- -UGGUCGUGgGGcUGG-UAGaGGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 72239 | 0.66 | 0.800659 |
Target: 5'- gGCCGGCACgaUCCGccACCAUUgccccaguUCCGcGCGGa -3' miRNA: 3'- -UGGUCGUG--GGGC--UGGUAG--------AGGU-CGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 73233 | 0.68 | 0.728403 |
Target: 5'- uACCGGCuCCUCGGCCA-CUCCGuCGu -3' miRNA: 3'- -UGGUCGuGGGGCUGGUaGAGGUcGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 73536 | 0.67 | 0.747085 |
Target: 5'- cACCAGgACCCCGuCCcgauccuccucAUCUUCGGCc- -3' miRNA: 3'- -UGGUCgUGGGGCuGG-----------UAGAGGUCGcc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 74404 | 0.68 | 0.699829 |
Target: 5'- gACCgAGCGCCUCGACgAgcUCUUCGGCc- -3' miRNA: 3'- -UGG-UCGUGGGGCUGgU--AGAGGUCGcc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 75349 | 0.71 | 0.534863 |
Target: 5'- gACCGGCgacgguucGCCaCCGACCcgCcgcggCCGGCGGc -3' miRNA: 3'- -UGGUCG--------UGG-GGCUGGuaGa----GGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 77020 | 0.67 | 0.756292 |
Target: 5'- cGCCGgcGCACCUCGACCGcucguccccgcUCgugCC-GCGGa -3' miRNA: 3'- -UGGU--CGUGGGGCUGGU-----------AGa--GGuCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 78358 | 0.66 | 0.841548 |
Target: 5'- gGCCAGCAgcuCCaacaCGGCCugcUCcgCCAGCGa -3' miRNA: 3'- -UGGUCGU---GGg---GCUGGu--AGa-GGUCGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 80440 | 0.69 | 0.680507 |
Target: 5'- cGCCGGCgGCCgCCGGCCcg--UCGGCGGc -3' miRNA: 3'- -UGGUCG-UGG-GGCUGGuagaGGUCGCC- -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 80490 | 0.66 | 0.825669 |
Target: 5'- aGCUGGCGCaccaCCGGCaCGUCUUCuGCGc -3' miRNA: 3'- -UGGUCGUGg---GGCUG-GUAGAGGuCGCc -5' |
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10708 | 3' | -59.6 | NC_002794.1 | + | 82082 | 0.66 | 0.800659 |
Target: 5'- gGCCcucucgGGCACCCCGACCucGUCUgCC-GCc- -3' miRNA: 3'- -UGG------UCGUGGGGCUGG--UAGA-GGuCGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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