miRNA display CGI


Results 81 - 100 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 82188 0.67 0.774395
Target:  5'- aGCCcgGGCGCCCCGAgCG-C-CCGGCa- -3'
miRNA:   3'- -UGG--UCGUGGGGCUgGUaGaGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 82642 0.68 0.689224
Target:  5'- cGCCGGCGCCagaagcgccgcgcUCGACgCcgCgCCGGCGGa -3'
miRNA:   3'- -UGGUCGUGG-------------GGCUG-GuaGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 83133 0.67 0.765398
Target:  5'- cGCCAGUACUUCGACCgccugacgacgaGUCagCuGCGGa -3'
miRNA:   3'- -UGGUCGUGGGGCUGG------------UAGagGuCGCC- -5'
10708 3' -59.6 NC_002794.1 + 83360 0.68 0.737786
Target:  5'- gGCCAGCcUCCCGugUcugCUCCAG-GGc -3'
miRNA:   3'- -UGGUCGuGGGGCugGua-GAGGUCgCC- -5'
10708 3' -59.6 NC_002794.1 + 83444 0.7 0.602351
Target:  5'- cACCGGCAUccaCCCGAagAUCUCCAaGgGGg -3'
miRNA:   3'- -UGGUCGUG---GGGCUggUAGAGGU-CgCC- -5'
10708 3' -59.6 NC_002794.1 + 85467 0.67 0.792034
Target:  5'- gGCCGGCG-CCCGGCC---UCCGGCc- -3'
miRNA:   3'- -UGGUCGUgGGGCUGGuagAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 86111 0.66 0.832897
Target:  5'- uCCGGCccgAgCCCGACCGgaugCUCCGGaccgagcCGGg -3'
miRNA:   3'- uGGUCG---UgGGGCUGGUa---GAGGUC-------GCC- -5'
10708 3' -59.6 NC_002794.1 + 86255 0.66 0.832897
Target:  5'- uCCGGCucgAgCCCGACCGgaugCUCCGGaccgagcCGGg -3'
miRNA:   3'- uGGUCG---UgGGGCUGGUa---GAGGUC-------GCC- -5'
10708 3' -59.6 NC_002794.1 + 86303 0.66 0.832897
Target:  5'- uCCGGCccgAgCCCGACCGgaugCUCCGGaccgagcCGGg -3'
miRNA:   3'- uGGUCG---UgGGGCUGGUa---GAGGUC-------GCC- -5'
10708 3' -59.6 NC_002794.1 + 86447 0.66 0.832897
Target:  5'- uCCGGCucgAgCCCGACCGgaugCUCCGGaccgagcCGGg -3'
miRNA:   3'- uGGUCG---UgGGGCUGGUa---GAGGUC-------GCC- -5'
10708 3' -59.6 NC_002794.1 + 86615 0.66 0.832897
Target:  5'- uCCGGCucgAgCCCGACCGgaugCUCCGGaccgagcCGGg -3'
miRNA:   3'- uGGUCG---UgGGGCUGGUa---GAGGUC-------GCC- -5'
10708 3' -59.6 NC_002794.1 + 90514 0.71 0.563536
Target:  5'- cGCCGcGCGCUUCGGCgcuCGUCUCC-GCGGg -3'
miRNA:   3'- -UGGU-CGUGGGGCUG---GUAGAGGuCGCC- -5'
10708 3' -59.6 NC_002794.1 + 90957 0.67 0.774395
Target:  5'- cGCCGagGCCCgGGCCcgCUUCGGCGu -3'
miRNA:   3'- -UGGUcgUGGGgCUGGuaGAGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 91568 0.66 0.809145
Target:  5'- aGCCGGCGCCgCUGAUgAacuaCUCCgAGUGGc -3'
miRNA:   3'- -UGGUCGUGG-GGCUGgUa---GAGG-UCGCC- -5'
10708 3' -59.6 NC_002794.1 + 94002 0.7 0.573188
Target:  5'- cGCCGGCGCCggcggcgggCCGGCgGguUCcgCCGGCGGg -3'
miRNA:   3'- -UGGUCGUGG---------GGCUGgU--AGa-GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 96186 0.71 0.525418
Target:  5'- cACCGGCGCCugCCGGCCgaGUCccugCCGGCGc -3'
miRNA:   3'- -UGGUCGUGG--GGCUGG--UAGa---GGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 96700 0.72 0.487404
Target:  5'- cGCCGGCAgcgccuucuccucCCCCGGCCGag-CCGGCGa -3'
miRNA:   3'- -UGGUCGU-------------GGGGCUGGUagaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 101471 0.73 0.426586
Target:  5'- cGCCGGCGCgCCCGcCCGaaacgCCGGCGGc -3'
miRNA:   3'- -UGGUCGUG-GGGCuGGUaga--GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 101536 0.67 0.774395
Target:  5'- cCCGGCGCCacguuCCGaacGCCGUUccgaacgCCGGCGGg -3'
miRNA:   3'- uGGUCGUGG-----GGC---UGGUAGa------GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 103758 0.71 0.563536
Target:  5'- cCgGGUACUCCucgaagauggcGugCAUCUCCGGCGGc -3'
miRNA:   3'- uGgUCGUGGGG-----------CugGUAGAGGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.