miRNA display CGI


Results 21 - 40 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 186853 0.66 0.841548
Target:  5'- cGCgGGCGCUgCCGugCAgCagCAGCGGg -3'
miRNA:   3'- -UGgUCGUGG-GGCugGUaGagGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 186119 0.73 0.426586
Target:  5'- cGCCGGguCCCCGG--AUCUCCAGCa- -3'
miRNA:   3'- -UGGUCguGGGGCUggUAGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 185554 0.66 0.841548
Target:  5'- gGCCGcGCGCCCCGcCCug--CC-GCGGc -3'
miRNA:   3'- -UGGU-CGUGGGGCuGGuagaGGuCGCC- -5'
10708 3' -59.6 NC_002794.1 + 184220 0.67 0.754458
Target:  5'- aACCAGCucccggcccaguUCCCGGCCcaggCUCCGGCc- -3'
miRNA:   3'- -UGGUCGu-----------GGGGCUGGua--GAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 184111 0.71 0.516036
Target:  5'- cGCCAGCGCCCCG-CUcg--CCGGCGu -3'
miRNA:   3'- -UGGUCGUGGGGCuGGuagaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 183620 0.68 0.718944
Target:  5'- gGCCGGCGCCCCcgcgcccCCGaCUCgAGCaGGg -3'
miRNA:   3'- -UGGUCGUGGGGcu-----GGUaGAGgUCG-CC- -5'
10708 3' -59.6 NC_002794.1 + 183443 0.67 0.774395
Target:  5'- gACCGGCGCCC--GCCAcCgCCGGCGc -3'
miRNA:   3'- -UGGUCGUGGGgcUGGUaGaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 183206 0.66 0.817484
Target:  5'- cGCCGGCGgCgCGuuCGUCgCCAGCGa -3'
miRNA:   3'- -UGGUCGUgGgGCugGUAGaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 182559 0.73 0.418148
Target:  5'- gGCCGGCACCgUcACCGggaUCUCCGuGCGGg -3'
miRNA:   3'- -UGGUCGUGGgGcUGGU---AGAGGU-CGCC- -5'
10708 3' -59.6 NC_002794.1 + 182015 0.66 0.825669
Target:  5'- cCCGGgACCCCGG-CGUCcgggccgCCGGCGa -3'
miRNA:   3'- uGGUCgUGGGGCUgGUAGa------GGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 181920 0.66 0.833692
Target:  5'- cACCcGCGCgaCGGCCGUCUCC--CGGg -3'
miRNA:   3'- -UGGuCGUGggGCUGGUAGAGGucGCC- -5'
10708 3' -59.6 NC_002794.1 + 181137 0.68 0.699829
Target:  5'- cACCAGCGCUUCuuCCGcCUCCAGCc- -3'
miRNA:   3'- -UGGUCGUGGGGcuGGUaGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 180749 0.69 0.661038
Target:  5'- uCCGGCuCCUCGGCgG-CUUCGGCGGc -3'
miRNA:   3'- uGGUCGuGGGGCUGgUaGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 180682 0.68 0.69019
Target:  5'- cGCCGGcCGCuCCCGGCg--C-CCGGCGGg -3'
miRNA:   3'- -UGGUC-GUG-GGGCUGguaGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 156403 0.77 0.248658
Target:  5'- gGCCGGCGCCgCGGCCG-CggccacggCCGGCGGg -3'
miRNA:   3'- -UGGUCGUGGgGCUGGUaGa-------GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 152416 0.68 0.728403
Target:  5'- gACCuGCuGCCCCgGGCCGUCUgUCGGCa- -3'
miRNA:   3'- -UGGuCG-UGGGG-CUGGUAGA-GGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 152265 0.66 0.836855
Target:  5'- -aCAGUACgCCguccaGACCGUCUucgacuaccggaaccCCGGCGGg -3'
miRNA:   3'- ugGUCGUGgGG-----CUGGUAGA---------------GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 151899 0.68 0.717994
Target:  5'- uUCGGCGCCCCagagccuGGCCGagCUCCGucuGCGGc -3'
miRNA:   3'- uGGUCGUGGGG-------CUGGUa-GAGGU---CGCC- -5'
10708 3' -59.6 NC_002794.1 + 150542 0.73 0.409813
Target:  5'- gGCCGGCGCCauGGCCGUCU-CGGCGc -3'
miRNA:   3'- -UGGUCGUGGggCUGGUAGAgGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 148207 0.72 0.47023
Target:  5'- cGCCGGCGCgcgCUCGAUCgGUCUCCGGuCGGc -3'
miRNA:   3'- -UGGUCGUG---GGGCUGG-UAGAGGUC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.