miRNA display CGI


Results 41 - 60 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 146987 0.71 0.544369
Target:  5'- gUCGGCGCCgCCGGCCGaCgUCGGCGGc -3'
miRNA:   3'- uGGUCGUGG-GGCUGGUaGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 144967 0.66 0.841548
Target:  5'- cUCGGCGCCUCGACgguGUCgcgaCCGGCGc -3'
miRNA:   3'- uGGUCGUGGGGCUGg--UAGa---GGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 141645 0.71 0.563536
Target:  5'- gGCCGGCgugGCCgCGGCCg---CCGGCGGg -3'
miRNA:   3'- -UGGUCG---UGGgGCUGGuagaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 138730 0.72 0.506722
Target:  5'- aGCCGGCucgacgggguCCCCGGCC--CUCCGGgGGc -3'
miRNA:   3'- -UGGUCGu---------GGGGCUGGuaGAGGUCgCC- -5'
10708 3' -59.6 NC_002794.1 + 138416 0.67 0.756292
Target:  5'- cGCCGGC-CgCCGACuCGUCgagCC-GCGGu -3'
miRNA:   3'- -UGGUCGuGgGGCUG-GUAGa--GGuCGCC- -5'
10708 3' -59.6 NC_002794.1 + 137607 0.66 0.836855
Target:  5'- cGCCGGCggucgcggcggcgguGCCCaCGACgaCGUC-CUGGCGGg -3'
miRNA:   3'- -UGGUCG---------------UGGG-GCUG--GUAGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 136702 0.68 0.699829
Target:  5'- uCCAGCGCCCgGugCAggcgccggUC-CCGGCGu -3'
miRNA:   3'- uGGUCGUGGGgCugGU--------AGaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 131700 0.67 0.792034
Target:  5'- cCCAG-ACCCCGACCGgaccccgagagCgagCgAGCGGg -3'
miRNA:   3'- uGGUCgUGGGGCUGGUa----------Ga--GgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 131261 0.69 0.680507
Target:  5'- cGCCGGCACCaCCGccggcACCAcCgCCGGCGc -3'
miRNA:   3'- -UGGUCGUGG-GGC-----UGGUaGaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 131162 0.7 0.592601
Target:  5'- cGCCAGCACggCGcCCGUCUCgAGcCGGa -3'
miRNA:   3'- -UGGUCGUGggGCuGGUAGAGgUC-GCC- -5'
10708 3' -59.6 NC_002794.1 + 130641 0.68 0.696943
Target:  5'- cGCCGGCccgcccgccgccccGCCgCCGGCCGcgggCUCCGccGCGGc -3'
miRNA:   3'- -UGGUCG--------------UGG-GGCUGGUa---GAGGU--CGCC- -5'
10708 3' -59.6 NC_002794.1 + 130508 0.66 0.825669
Target:  5'- ---uGCGCCUCGcCCA-CUCgAGCGGg -3'
miRNA:   3'- ugguCGUGGGGCuGGUaGAGgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 125350 0.68 0.709417
Target:  5'- cACCGGCAgCCgCUGGCCGUCagcaaCAGCGu -3'
miRNA:   3'- -UGGUCGU-GG-GGCUGGUAGag---GUCGCc -5'
10708 3' -59.6 NC_002794.1 + 124139 0.74 0.385439
Target:  5'- uCCGGCGCCCgGgaGCgGUCUCC-GCGGg -3'
miRNA:   3'- uGGUCGUGGGgC--UGgUAGAGGuCGCC- -5'
10708 3' -59.6 NC_002794.1 + 121793 0.67 0.747085
Target:  5'- cCCGGcCACCgCGACCGg--CCGGCGc -3'
miRNA:   3'- uGGUC-GUGGgGCUGGUagaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 121407 0.71 0.525418
Target:  5'- cGCCGGgACCgCGACCGUCgCCGggaccGCGGc -3'
miRNA:   3'- -UGGUCgUGGgGCUGGUAGaGGU-----CGCC- -5'
10708 3' -59.6 NC_002794.1 + 120866 0.68 0.722736
Target:  5'- uCCAGCGCCUCGGCUgGUgUCCGaacggcgaggucaccGCGGg -3'
miRNA:   3'- uGGUCGUGGGGCUGG-UAgAGGU---------------CGCC- -5'
10708 3' -59.6 NC_002794.1 + 119676 0.75 0.347003
Target:  5'- uCCGGCGuCCCCGG-CGUCUCCGGCu- -3'
miRNA:   3'- uGGUCGU-GGGGCUgGUAGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 119610 0.68 0.728403
Target:  5'- uCCAGCGCCUCGaggaacgucucgGCCGUCgUCAGCa- -3'
miRNA:   3'- uGGUCGUGGGGC------------UGGUAGaGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 119524 0.66 0.809145
Target:  5'- aGCCGGCcgcggACCCCucguccgcGGCCGUCgCCGGCc- -3'
miRNA:   3'- -UGGUCG-----UGGGG--------CUGGUAGaGGUCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.