miRNA display CGI


Results 61 - 80 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 119393 0.66 0.817484
Target:  5'- gGCCAGCACcuggcgccgcagCCCGAUCAcuccguugUCUCgcagguccgaCGGCGGc -3'
miRNA:   3'- -UGGUCGUG------------GGGCUGGU--------AGAG----------GUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 116939 0.66 0.833692
Target:  5'- gUCGGCGuCCCCGGCgG-CggcgUCGGCGGg -3'
miRNA:   3'- uGGUCGU-GGGGCUGgUaGa---GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 116868 0.71 0.515101
Target:  5'- gGCCGugucGCGCUcgucaggggggcgCCGgcGCCGUCUCCGGCGGc -3'
miRNA:   3'- -UGGU----CGUGG-------------GGC--UGGUAGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 116360 0.66 0.841548
Target:  5'- gGCCGcGCGgUCCGACCGgUCgguggCguGCGGg -3'
miRNA:   3'- -UGGU-CGUgGGGCUGGU-AGa----GguCGCC- -5'
10708 3' -59.6 NC_002794.1 + 116311 0.66 0.833692
Target:  5'- aGCCcgagAGCACCgCGAUCAccUCgUCCAGCu- -3'
miRNA:   3'- -UGG----UCGUGGgGCUGGU--AG-AGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 114868 0.72 0.488316
Target:  5'- uCCAGCGCCUCGAgCAgCUgCAGCGu -3'
miRNA:   3'- uGGUCGUGGGGCUgGUaGAgGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 114806 0.66 0.833692
Target:  5'- -gCAGguCCCgGAggcCCGcgcgcUCUCCGGCGGc -3'
miRNA:   3'- ugGUCguGGGgCU---GGU-----AGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 114747 0.67 0.764492
Target:  5'- aGCCGGCGCCgCCcGCCGgcgccggUCcUCGGCGGc -3'
miRNA:   3'- -UGGUCGUGG-GGcUGGU-------AGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 114497 0.66 0.841548
Target:  5'- uCCAcGCGCgCCgGACCGUCccggagcgagUCgAGCGGc -3'
miRNA:   3'- uGGU-CGUG-GGgCUGGUAG----------AGgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 114198 0.77 0.25443
Target:  5'- -gCGGCGCCaCGGCCggcGUCUCCGGCGGc -3'
miRNA:   3'- ugGUCGUGGgGCUGG---UAGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 113610 0.73 0.413135
Target:  5'- uCCAGCGCCgCGGCCAgguucagguugaacgUCUCgagCAGCGGc -3'
miRNA:   3'- uGGUCGUGGgGCUGGU---------------AGAG---GUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 112565 0.78 0.23744
Target:  5'- cGCCGGC-CaCCCGGCCGcUCUCCAGCu- -3'
miRNA:   3'- -UGGUCGuG-GGGCUGGU-AGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 112322 0.69 0.661038
Target:  5'- cGCCgacggcggggAGCGCgCCGGCCggCggcgCCGGCGGc -3'
miRNA:   3'- -UGG----------UCGUGgGGCUGGuaGa---GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 112266 0.67 0.792034
Target:  5'- gACCGGCGucucguCCUCGGCCuccGUgUCgGGCGGc -3'
miRNA:   3'- -UGGUCGU------GGGGCUGG---UAgAGgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 111990 0.66 0.825669
Target:  5'- cACCGGCacGCCCUGcGCgGUCaCCAGuCGGc -3'
miRNA:   3'- -UGGUCG--UGGGGC-UGgUAGaGGUC-GCC- -5'
10708 3' -59.6 NC_002794.1 + 111568 0.66 0.800659
Target:  5'- cGCCAGCGCggucaCUacgguGGCCAgCUCgAGCGGg -3'
miRNA:   3'- -UGGUCGUGg----GG-----CUGGUaGAGgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 111104 0.71 0.534863
Target:  5'- cCCGGCgggACCgUGGCCGUCgacggcgCCGGCGGc -3'
miRNA:   3'- uGGUCG---UGGgGCUGGUAGa------GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 110625 0.71 0.516036
Target:  5'- aGCCgcGGCGCCgCGGCgGcggggucggguuUCUCCGGCGGc -3'
miRNA:   3'- -UGG--UCGUGGgGCUGgU------------AGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 109600 0.77 0.266303
Target:  5'- gACCAGCACCgugguuuccgaCCGACgAUCUCguGUGGa -3'
miRNA:   3'- -UGGUCGUGG-----------GGCUGgUAGAGguCGCC- -5'
10708 3' -59.6 NC_002794.1 + 108423 0.67 0.774395
Target:  5'- -aCGGCGCCCaccccgCGACCGgcggcaCUCgCGGCGGc -3'
miRNA:   3'- ugGUCGUGGG------GCUGGUa-----GAG-GUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.