miRNA display CGI


Results 101 - 120 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 83444 0.7 0.602351
Target:  5'- cACCGGCAUccaCCCGAagAUCUCCAaGgGGg -3'
miRNA:   3'- -UGGUCGUG---GGGCUggUAGAGGU-CgCC- -5'
10708 3' -59.6 NC_002794.1 + 83360 0.68 0.737786
Target:  5'- gGCCAGCcUCCCGugUcugCUCCAG-GGc -3'
miRNA:   3'- -UGGUCGuGGGGCugGua-GAGGUCgCC- -5'
10708 3' -59.6 NC_002794.1 + 83133 0.67 0.765398
Target:  5'- cGCCAGUACUUCGACCgccugacgacgaGUCagCuGCGGa -3'
miRNA:   3'- -UGGUCGUGGGGCUGG------------UAGagGuCGCC- -5'
10708 3' -59.6 NC_002794.1 + 82642 0.68 0.689224
Target:  5'- cGCCGGCGCCagaagcgccgcgcUCGACgCcgCgCCGGCGGa -3'
miRNA:   3'- -UGGUCGUGG-------------GGCUG-GuaGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 82188 0.67 0.774395
Target:  5'- aGCCcgGGCGCCCCGAgCG-C-CCGGCa- -3'
miRNA:   3'- -UGG--UCGUGGGGCUgGUaGaGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 82082 0.66 0.800659
Target:  5'- gGCCcucucgGGCACCCCGACCucGUCUgCC-GCc- -3'
miRNA:   3'- -UGG------UCGUGGGGCUGG--UAGA-GGuCGcc -5'
10708 3' -59.6 NC_002794.1 + 80490 0.66 0.825669
Target:  5'- aGCUGGCGCaccaCCGGCaCGUCUUCuGCGc -3'
miRNA:   3'- -UGGUCGUGg---GGCUG-GUAGAGGuCGCc -5'
10708 3' -59.6 NC_002794.1 + 80440 0.69 0.680507
Target:  5'- cGCCGGCgGCCgCCGGCCcg--UCGGCGGc -3'
miRNA:   3'- -UGGUCG-UGG-GGCUGGuagaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 78358 0.66 0.841548
Target:  5'- gGCCAGCAgcuCCaacaCGGCCugcUCcgCCAGCGa -3'
miRNA:   3'- -UGGUCGU---GGg---GCUGGu--AGa-GGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 77020 0.67 0.756292
Target:  5'- cGCCGgcGCACCUCGACCGcucguccccgcUCgugCC-GCGGa -3'
miRNA:   3'- -UGGU--CGUGGGGCUGGU-----------AGa--GGuCGCC- -5'
10708 3' -59.6 NC_002794.1 + 75349 0.71 0.534863
Target:  5'- gACCGGCgacgguucGCCaCCGACCcgCcgcggCCGGCGGc -3'
miRNA:   3'- -UGGUCG--------UGG-GGCUGGuaGa----GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 74404 0.68 0.699829
Target:  5'- gACCgAGCGCCUCGACgAgcUCUUCGGCc- -3'
miRNA:   3'- -UGG-UCGUGGGGCUGgU--AGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 73536 0.67 0.747085
Target:  5'- cACCAGgACCCCGuCCcgauccuccucAUCUUCGGCc- -3'
miRNA:   3'- -UGGUCgUGGGGCuGG-----------UAGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 73233 0.68 0.728403
Target:  5'- uACCGGCuCCUCGGCCA-CUCCGuCGu -3'
miRNA:   3'- -UGGUCGuGGGGCUGGUaGAGGUcGCc -5'
10708 3' -59.6 NC_002794.1 + 72239 0.66 0.800659
Target:  5'- gGCCGGCACgaUCCGccACCAUUgccccaguUCCGcGCGGa -3'
miRNA:   3'- -UGGUCGUG--GGGC--UGGUAG--------AGGU-CGCC- -5'
10708 3' -59.6 NC_002794.1 + 71963 0.66 0.833692
Target:  5'- uACCGGCGCaUCaGCCgGUC-CCGGCGGa -3'
miRNA:   3'- -UGGUCGUGgGGcUGG-UAGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 71171 0.67 0.78942
Target:  5'- cACCAGCACCCCccggcggaacaggaGAUCGa--CCAGCGc -3'
miRNA:   3'- -UGGUCGUGGGG--------------CUGGUagaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 71104 0.7 0.61212
Target:  5'- cGCCGGCGgCCUGGCCGgagaggcgCUCguucaucuccguCAGCGGg -3'
miRNA:   3'- -UGGUCGUgGGGCUGGUa-------GAG------------GUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 70476 0.66 0.836855
Target:  5'- aGCCAGCACCCgaugucggggcagggCGACCGaCaggagccggUCCAGCc- -3'
miRNA:   3'- -UGGUCGUGGG---------------GCUGGUaG---------AGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 70211 0.69 0.651268
Target:  5'- uCCAGCucGCCCgGACgGUCgggCgGGCGGc -3'
miRNA:   3'- uGGUCG--UGGGgCUGgUAGa--GgUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.