miRNA display CGI


Results 41 - 60 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 78358 0.66 0.841548
Target:  5'- gGCCAGCAgcuCCaacaCGGCCugcUCcgCCAGCGa -3'
miRNA:   3'- -UGGUCGU---GGg---GCUGGu--AGa-GGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 53195 0.66 0.841548
Target:  5'- aGCCgAGcCACCCgGACuCGUCgucgUCgAGCGGc -3'
miRNA:   3'- -UGG-UC-GUGGGgCUG-GUAG----AGgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 144967 0.66 0.841548
Target:  5'- cUCGGCGCCUCGACgguGUCgcgaCCGGCGc -3'
miRNA:   3'- uGGUCGUGGGGCUGg--UAGa---GGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 186853 0.66 0.841548
Target:  5'- cGCgGGCGCUgCCGugCAgCagCAGCGGg -3'
miRNA:   3'- -UGgUCGUGG-GGCugGUaGagGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 34057 0.66 0.841548
Target:  5'- gGCCcGCGCacgaCCCG-CCGUUcccgCCGGCGGc -3'
miRNA:   3'- -UGGuCGUG----GGGCuGGUAGa---GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 71963 0.66 0.833692
Target:  5'- uACCGGCGCaUCaGCCgGUC-CCGGCGGa -3'
miRNA:   3'- -UGGUCGUGgGGcUGG-UAGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 107515 0.66 0.833692
Target:  5'- uGCCGGUcgacGCCgaCGGCCGgcgCggcgCCGGCGGc -3'
miRNA:   3'- -UGGUCG----UGGg-GCUGGUa--Ga---GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 111990 0.66 0.825669
Target:  5'- cACCGGCacGCCCUGcGCgGUCaCCAGuCGGc -3'
miRNA:   3'- -UGGUCG--UGGGGC-UGgUAGaGGUC-GCC- -5'
10708 3' -59.6 NC_002794.1 + 66709 0.66 0.825669
Target:  5'- cGCC-GCGCCCggcaCGGCCGcCgccaccgCCGGCGGu -3'
miRNA:   3'- -UGGuCGUGGG----GCUGGUaGa------GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 188904 0.66 0.825669
Target:  5'- gGCCAGCucggucAgCCCGuACag-CUUCAGCGGa -3'
miRNA:   3'- -UGGUCG------UgGGGC-UGguaGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 86111 0.66 0.832897
Target:  5'- uCCGGCccgAgCCCGACCGgaugCUCCGGaccgagcCGGg -3'
miRNA:   3'- uGGUCG---UgGGGCUGGUa---GAGGUC-------GCC- -5'
10708 3' -59.6 NC_002794.1 + 86255 0.66 0.832897
Target:  5'- uCCGGCucgAgCCCGACCGgaugCUCCGGaccgagcCGGg -3'
miRNA:   3'- uGGUCG---UgGGGCUGGUa---GAGGUC-------GCC- -5'
10708 3' -59.6 NC_002794.1 + 86447 0.66 0.832897
Target:  5'- uCCGGCucgAgCCCGACCGgaugCUCCGGaccgagcCGGg -3'
miRNA:   3'- uGGUCG---UgGGGCUGGUa---GAGGUC-------GCC- -5'
10708 3' -59.6 NC_002794.1 + 86303 0.66 0.832897
Target:  5'- uCCGGCccgAgCCCGACCGgaugCUCCGGaccgagcCGGg -3'
miRNA:   3'- uGGUCG---UgGGGCUGGUa---GAGGUC-------GCC- -5'
10708 3' -59.6 NC_002794.1 + 86615 0.66 0.832897
Target:  5'- uCCGGCucgAgCCCGACCGgaugCUCCGGaccgagcCGGg -3'
miRNA:   3'- uGGUCG---UgGGGCUGGUa---GAGGUC-------GCC- -5'
10708 3' -59.6 NC_002794.1 + 116939 0.66 0.833692
Target:  5'- gUCGGCGuCCCCGGCgG-CggcgUCGGCGGg -3'
miRNA:   3'- uGGUCGU-GGGGCUGgUaGa---GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 114806 0.66 0.833692
Target:  5'- -gCAGguCCCgGAggcCCGcgcgcUCUCCGGCGGc -3'
miRNA:   3'- ugGUCguGGGgCU---GGU-----AGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 26639 0.66 0.833692
Target:  5'- uCCGcGCACCCggacggCGGCCggCUCguCGGCGGg -3'
miRNA:   3'- uGGU-CGUGGG------GCUGGuaGAG--GUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 11859 0.66 0.833692
Target:  5'- cGCCGGCGacgaccgcccgcCCCgCGACgGgucCUCgAGCGGg -3'
miRNA:   3'- -UGGUCGU------------GGG-GCUGgUa--GAGgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 68379 0.66 0.833692
Target:  5'- cGCC-GCcCCCCGACCugCUCC-GCGa -3'
miRNA:   3'- -UGGuCGuGGGGCUGGuaGAGGuCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.