Results 81 - 100 of 185 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 49256 | 0.66 | 0.809145 |
Target: 5'- cCCGcGCACCCaCGACgGgcgCUCCAaCGGc -3' miRNA: 3'- uGGU-CGUGGG-GCUGgUa--GAGGUcGCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 12493 | 0.66 | 0.809145 |
Target: 5'- cACCuGCACguuCCCGAgCCGcUCgaCCGGCGGc -3' miRNA: 3'- -UGGuCGUG---GGGCU-GGU-AGa-GGUCGCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 119524 | 0.66 | 0.809145 |
Target: 5'- aGCCGGCcgcggACCCCucguccgcGGCCGUCgCCGGCc- -3' miRNA: 3'- -UGGUCG-----UGGGG--------CUGGUAGaGGUCGcc -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 62740 | 0.66 | 0.800659 |
Target: 5'- cCCGcCGCCCgCGGCCGUCucgcUCCGGCu- -3' miRNA: 3'- uGGUcGUGGG-GCUGGUAG----AGGUCGcc -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 66936 | 0.66 | 0.809145 |
Target: 5'- cGCCAcCGCCCCcgaGGCCcUCgaggCCGGCGa -3' miRNA: 3'- -UGGUcGUGGGG---CUGGuAGa---GGUCGCc -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 111568 | 0.66 | 0.800659 |
Target: 5'- cGCCAGCGCggucaCUacgguGGCCAgCUCgAGCGGg -3' miRNA: 3'- -UGGUCGUGg----GG-----CUGGUaGAGgUCGCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 72239 | 0.66 | 0.800659 |
Target: 5'- gGCCGGCACgaUCCGccACCAUUgccccaguUCCGcGCGGa -3' miRNA: 3'- -UGGUCGUG--GGGC--UGGUAG--------AGGU-CGCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 119393 | 0.66 | 0.817484 |
Target: 5'- gGCCAGCACcuggcgccgcagCCCGAUCAcuccguugUCUCgcagguccgaCGGCGGc -3' miRNA: 3'- -UGGUCGUG------------GGGCUGGU--------AGAG----------GUCGCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 62790 | 0.66 | 0.817484 |
Target: 5'- cGCCuccGgGCCCCuACC-UCUCCGGCa- -3' miRNA: 3'- -UGGu--CgUGGGGcUGGuAGAGGUCGcc -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 13862 | 0.66 | 0.817484 |
Target: 5'- cGCCGcCGCCgCGACCcgguUCUCCgAGCGc -3' miRNA: 3'- -UGGUcGUGGgGCUGGu---AGAGG-UCGCc -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 188904 | 0.66 | 0.825669 |
Target: 5'- gGCCAGCucggucAgCCCGuACag-CUUCAGCGGa -3' miRNA: 3'- -UGGUCG------UgGGGC-UGguaGAGGUCGCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 66709 | 0.66 | 0.825669 |
Target: 5'- cGCC-GCGCCCggcaCGGCCGcCgccaccgCCGGCGGu -3' miRNA: 3'- -UGGuCGUGGG----GCUGGUaGa------GGUCGCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 111990 | 0.66 | 0.825669 |
Target: 5'- cACCGGCacGCCCUGcGCgGUCaCCAGuCGGc -3' miRNA: 3'- -UGGUCG--UGGGGC-UGgUAGaGGUC-GCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 182015 | 0.66 | 0.825669 |
Target: 5'- cCCGGgACCCCGG-CGUCcgggccgCCGGCGa -3' miRNA: 3'- uGGUCgUGGGGCUgGUAGa------GGUCGCc -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 65911 | 0.66 | 0.825669 |
Target: 5'- -----gACCuuGACCGUCgucgCCGGCGGc -3' miRNA: 3'- uggucgUGGggCUGGUAGa---GGUCGCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 19259 | 0.66 | 0.825669 |
Target: 5'- gACCGGCcgcgGCCCCcguGGCgCGUCUCCuGGCcuGGa -3' miRNA: 3'- -UGGUCG----UGGGG---CUG-GUAGAGG-UCG--CC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 187691 | 0.66 | 0.825669 |
Target: 5'- uCgAGCGgCCCGuugGCCGUCUCCGucaCGGg -3' miRNA: 3'- uGgUCGUgGGGC---UGGUAGAGGUc--GCC- -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 183206 | 0.66 | 0.817484 |
Target: 5'- cGCCGGCGgCgCGuuCGUCgCCAGCGa -3' miRNA: 3'- -UGGUCGUgGgGCugGUAGaGGUCGCc -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 80490 | 0.66 | 0.825669 |
Target: 5'- aGCUGGCGCaccaCCGGCaCGUCUUCuGCGc -3' miRNA: 3'- -UGGUCGUGg---GGCUG-GUAGAGGuCGCc -5' |
|||||||
10708 | 3' | -59.6 | NC_002794.1 | + | 130508 | 0.66 | 0.825669 |
Target: 5'- ---uGCGCCUCGcCCA-CUCgAGCGGg -3' miRNA: 3'- ugguCGUGGGGCuGGUaGAGgUCGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home