miRNA display CGI


Results 21 - 40 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 181920 0.66 0.833692
Target:  5'- cACCcGCGCgaCGGCCGUCUCC--CGGg -3'
miRNA:   3'- -UGGuCGUGggGCUGGUAGAGGucGCC- -5'
10708 3' -59.6 NC_002794.1 + 86111 0.66 0.832897
Target:  5'- uCCGGCccgAgCCCGACCGgaugCUCCGGaccgagcCGGg -3'
miRNA:   3'- uGGUCG---UgGGGCUGGUa---GAGGUC-------GCC- -5'
10708 3' -59.6 NC_002794.1 + 86255 0.66 0.832897
Target:  5'- uCCGGCucgAgCCCGACCGgaugCUCCGGaccgagcCGGg -3'
miRNA:   3'- uGGUCG---UgGGGCUGGUa---GAGGUC-------GCC- -5'
10708 3' -59.6 NC_002794.1 + 86447 0.66 0.832897
Target:  5'- uCCGGCucgAgCCCGACCGgaugCUCCGGaccgagcCGGg -3'
miRNA:   3'- uGGUCG---UgGGGCUGGUa---GAGGUC-------GCC- -5'
10708 3' -59.6 NC_002794.1 + 86303 0.66 0.832897
Target:  5'- uCCGGCccgAgCCCGACCGgaugCUCCGGaccgagcCGGg -3'
miRNA:   3'- uGGUCG---UgGGGCUGGUa---GAGGUC-------GCC- -5'
10708 3' -59.6 NC_002794.1 + 86615 0.66 0.832897
Target:  5'- uCCGGCucgAgCCCGACCGgaugCUCCGGaccgagcCGGg -3'
miRNA:   3'- uGGUCG---UgGGGCUGGUa---GAGGUC-------GCC- -5'
10708 3' -59.6 NC_002794.1 + 130508 0.66 0.825669
Target:  5'- ---uGCGCCUCGcCCA-CUCgAGCGGg -3'
miRNA:   3'- ugguCGUGGGGCuGGUaGAGgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 80490 0.66 0.825669
Target:  5'- aGCUGGCGCaccaCCGGCaCGUCUUCuGCGc -3'
miRNA:   3'- -UGGUCGUGg---GGCUG-GUAGAGGuCGCc -5'
10708 3' -59.6 NC_002794.1 + 187691 0.66 0.825669
Target:  5'- uCgAGCGgCCCGuugGCCGUCUCCGucaCGGg -3'
miRNA:   3'- uGgUCGUgGGGC---UGGUAGAGGUc--GCC- -5'
10708 3' -59.6 NC_002794.1 + 19259 0.66 0.825669
Target:  5'- gACCGGCcgcgGCCCCcguGGCgCGUCUCCuGGCcuGGa -3'
miRNA:   3'- -UGGUCG----UGGGG---CUG-GUAGAGG-UCG--CC- -5'
10708 3' -59.6 NC_002794.1 + 65911 0.66 0.825669
Target:  5'- -----gACCuuGACCGUCgucgCCGGCGGc -3'
miRNA:   3'- uggucgUGGggCUGGUAGa---GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 182015 0.66 0.825669
Target:  5'- cCCGGgACCCCGG-CGUCcgggccgCCGGCGa -3'
miRNA:   3'- uGGUCgUGGGGCUgGUAGa------GGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 111990 0.66 0.825669
Target:  5'- cACCGGCacGCCCUGcGCgGUCaCCAGuCGGc -3'
miRNA:   3'- -UGGUCG--UGGGGC-UGgUAGaGGUC-GCC- -5'
10708 3' -59.6 NC_002794.1 + 66709 0.66 0.825669
Target:  5'- cGCC-GCGCCCggcaCGGCCGcCgccaccgCCGGCGGu -3'
miRNA:   3'- -UGGuCGUGGG----GCUGGUaGa------GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 188904 0.66 0.825669
Target:  5'- gGCCAGCucggucAgCCCGuACag-CUUCAGCGGa -3'
miRNA:   3'- -UGGUCG------UgGGGC-UGguaGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 190104 0.66 0.817484
Target:  5'- cCCA-CGCCCCG-CCGUCcgcgCCgaAGCGGu -3'
miRNA:   3'- uGGUcGUGGGGCuGGUAGa---GG--UCGCC- -5'
10708 3' -59.6 NC_002794.1 + 119393 0.66 0.817484
Target:  5'- gGCCAGCACcuggcgccgcagCCCGAUCAcuccguugUCUCgcagguccgaCGGCGGc -3'
miRNA:   3'- -UGGUCGUG------------GGGCUGGU--------AGAG----------GUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 62790 0.66 0.817484
Target:  5'- cGCCuccGgGCCCCuACC-UCUCCGGCa- -3'
miRNA:   3'- -UGGu--CgUGGGGcUGGuAGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 13862 0.66 0.817484
Target:  5'- cGCCGcCGCCgCGACCcgguUCUCCgAGCGc -3'
miRNA:   3'- -UGGUcGUGGgGCUGGu---AGAGG-UCGCc -5'
10708 3' -59.6 NC_002794.1 + 36176 0.66 0.817484
Target:  5'- cACCcGCGCCCCgGGCCg---CCAGCa- -3'
miRNA:   3'- -UGGuCGUGGGG-CUGGuagaGGUCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.