miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 111136 0.66 0.949132
Target:  5'- cGGCCGguGCuccACGcGGUAGCGGgUcAGGc -3'
miRNA:   3'- -CCGGCguCG---UGU-CUAUCGCCgAcUUC- -5'
10708 5' -55.6 NC_002794.1 + 89714 0.66 0.944825
Target:  5'- cGCCGCGGUGCcGAUccgcGCGGCgucgguccuUGggGa -3'
miRNA:   3'- cCGGCGUCGUGuCUAu---CGCCG---------ACuuC- -5'
10708 5' -55.6 NC_002794.1 + 103578 0.66 0.949132
Target:  5'- uGGCCgacgaGCAGCggucggGCAGGcAGCGGCggcacgcgcucuUGGAGa -3'
miRNA:   3'- -CCGG-----CGUCG------UGUCUaUCGCCG------------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 58543 0.66 0.944825
Target:  5'- cGCCGCGGCGCGcgcgcuGcUGGCGcGCUGc-- -3'
miRNA:   3'- cCGGCGUCGUGU------CuAUCGC-CGACuuc -5'
10708 5' -55.6 NC_002794.1 + 150801 0.66 0.944825
Target:  5'- aGGCCccGCGGCggACGGccgAGCcGCUGGAGc -3'
miRNA:   3'- -CCGG--CGUCG--UGUCua-UCGcCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 33482 0.66 0.944825
Target:  5'- cGCUGCAGCugggcaacauGCAGA-AGCuGCUGGAc -3'
miRNA:   3'- cCGGCGUCG----------UGUCUaUCGcCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 60512 0.66 0.940286
Target:  5'- cGUCGaCGGCACGGAggGGCuGgUGGAGa -3'
miRNA:   3'- cCGGC-GUCGUGUCUa-UCGcCgACUUC- -5'
10708 5' -55.6 NC_002794.1 + 48564 0.66 0.940286
Target:  5'- cGGCCGCccGUcCAGAUgGGCGaGCcGGAGg -3'
miRNA:   3'- -CCGGCGu-CGuGUCUA-UCGC-CGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 91597 0.66 0.944825
Target:  5'- uGGCCGCuGGUGCGc---GCGGCcGAGGg -3'
miRNA:   3'- -CCGGCG-UCGUGUcuauCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 186312 0.66 0.942129
Target:  5'- cGCCGCGGCGCGcucguccuccaacacGAUcgacGGCGGCg---- -3'
miRNA:   3'- cCGGCGUCGUGU---------------CUA----UCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 115974 0.66 0.944825
Target:  5'- gGGgaGCGGgACGGggAGCGGCgccgcGGAGa -3'
miRNA:   3'- -CCggCGUCgUGUCuaUCGCCGa----CUUC- -5'
10708 5' -55.6 NC_002794.1 + 94281 0.66 0.944825
Target:  5'- cGG-CGCGGCccgaGCGGggGGCGGCUcGGGc -3'
miRNA:   3'- -CCgGCGUCG----UGUCuaUCGCCGAcUUC- -5'
10708 5' -55.6 NC_002794.1 + 117841 0.67 0.91406
Target:  5'- aGCaGCGGCACGGAgcgcgacGGgGGCUGGc- -3'
miRNA:   3'- cCGgCGUCGUGUCUa------UCgCCGACUuc -5'
10708 5' -55.6 NC_002794.1 + 32875 0.67 0.91406
Target:  5'- gGGCgGCGGCgGCGGc-GGCGGCaucaUGGAGc -3'
miRNA:   3'- -CCGgCGUCG-UGUCuaUCGCCG----ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 114341 0.67 0.919217
Target:  5'- cGCCGCAGCGgcucguccgccgcCAGGgc-CGGCUGcAGGg -3'
miRNA:   3'- cCGGCGUCGU-------------GUCUaucGCCGAC-UUC- -5'
10708 5' -55.6 NC_002794.1 + 121748 0.67 0.91406
Target:  5'- cGGCgGCgAGaCGgAGAUGGCGGUgcccGAGGc -3'
miRNA:   3'- -CCGgCG-UC-GUgUCUAUCGCCGa---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 70677 0.67 0.919778
Target:  5'- cGCCGCGGCGguGAcguccugucGCcGCUGggGg -3'
miRNA:   3'- cCGGCGUCGUguCUau-------CGcCGACuuC- -5'
10708 5' -55.6 NC_002794.1 + 107880 0.67 0.919778
Target:  5'- cGGagGCGGCGCGGcggguGCGGCUGccGg -3'
miRNA:   3'- -CCggCGUCGUGUCuau--CGCCGACuuC- -5'
10708 5' -55.6 NC_002794.1 + 111656 0.67 0.919778
Target:  5'- cGGCCGCGGCcacgcccguCGGAUA-CGGUcguccaggccgUGAAGa -3'
miRNA:   3'- -CCGGCGUCGu--------GUCUAUcGCCG-----------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 100800 0.67 0.911708
Target:  5'- cGGCCGCuucuGCGCcuacgugccgGGCGGCgGggGc -3'
miRNA:   3'- -CCGGCGu---CGUGucua------UCGCCGaCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.