miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 87160 0.67 0.888866
Target:  5'- gGGUgGgGGUGCAGGccgGGCGGgUGggGg -3'
miRNA:   3'- -CCGgCgUCGUGUCUa--UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 87202 0.67 0.888866
Target:  5'- gGGUgGgGGUGCAGGccgGGCGGgUGggGg -3'
miRNA:   3'- -CCGgCgUCGUGUCUa--UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 88079 0.67 0.901923
Target:  5'- gGGCCGCGGUuugaACGGGgcGUGGUgaUGAGc -3'
miRNA:   3'- -CCGGCGUCG----UGUCUauCGCCG--ACUUc -5'
10708 5' -55.6 NC_002794.1 + 70069 0.67 0.901923
Target:  5'- cGGCCGCAGcCGCAGcaaGGCGacgcaggccgcGCaGAAGa -3'
miRNA:   3'- -CCGGCGUC-GUGUCua-UCGC-----------CGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 122344 0.67 0.90689
Target:  5'- uGGCCGUccggAGCACcgAGGUcugcuacGGCGGCagcuaccUGAAGg -3'
miRNA:   3'- -CCGGCG----UCGUG--UCUA-------UCGCCG-------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 116129 0.67 0.919778
Target:  5'- cGCCGCGGCgGCGGc-GGCGGCg---- -3'
miRNA:   3'- cCGGCGUCG-UGUCuaUCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 111656 0.67 0.919778
Target:  5'- cGGCCGCGGCcacgcccguCGGAUA-CGGUcguccaggccgUGAAGa -3'
miRNA:   3'- -CCGGCGUCGu--------GUCUAUcGCCG-----------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 107880 0.67 0.919778
Target:  5'- cGGagGCGGCGCGGcggguGCGGCUGccGg -3'
miRNA:   3'- -CCggCGUCGUGUCuau--CGCCGACuuC- -5'
10708 5' -55.6 NC_002794.1 + 70677 0.67 0.919778
Target:  5'- cGCCGCGGCGguGAcguccugucGCcGCUGggGg -3'
miRNA:   3'- cCGGCGUCGUguCUau-------CGcCGACuuC- -5'
10708 5' -55.6 NC_002794.1 + 121748 0.67 0.91406
Target:  5'- cGGCgGCgAGaCGgAGAUGGCGGUgcccGAGGc -3'
miRNA:   3'- -CCGgCG-UC-GUgUCUAUCGCCGa---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 114341 0.67 0.919217
Target:  5'- cGCCGCAGCGgcucguccgccgcCAGGgc-CGGCUGcAGGg -3'
miRNA:   3'- cCGGCGUCGU-------------GUCUaucGCCGAC-UUC- -5'
10708 5' -55.6 NC_002794.1 + 32875 0.67 0.91406
Target:  5'- gGGCgGCGGCgGCGGc-GGCGGCaucaUGGAGc -3'
miRNA:   3'- -CCGgCGUCG-UGUCuaUCGCCG----ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 117841 0.67 0.91406
Target:  5'- aGCaGCGGCACGGAgcgcgacGGgGGCUGGc- -3'
miRNA:   3'- cCGgCGUCGUGUCUa------UCgCCGACUuc -5'
10708 5' -55.6 NC_002794.1 + 100800 0.67 0.911708
Target:  5'- cGGCCGCuucuGCGCcuacgugccgGGCGGCgGggGc -3'
miRNA:   3'- -CCGGCGu---CGUGucua------UCGCCGaCuuC- -5'
10708 5' -55.6 NC_002794.1 + 142919 0.67 0.91406
Target:  5'- gGGCCGgAGCA-GGAUguagaagcaGGUGGCcGAGGg -3'
miRNA:   3'- -CCGGCgUCGUgUCUA---------UCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 100456 0.68 0.881999
Target:  5'- cGGCgGCGGCGCcuucccGGUGGCGGagaacCUGGAc -3'
miRNA:   3'- -CCGgCGUCGUGu-----CUAUCGCC-----GACUUc -5'
10708 5' -55.6 NC_002794.1 + 118369 0.68 0.881999
Target:  5'- aGGUCGCGGUAgAGAUacugccgcucGGCGGCg---- -3'
miRNA:   3'- -CCGGCGUCGUgUCUA----------UCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 152588 0.68 0.881999
Target:  5'- cGGCCGCcacgucccugcGGCGCGGGcccaAGCGGCg---- -3'
miRNA:   3'- -CCGGCG-----------UCGUGUCUa---UCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 160004 0.68 0.881999
Target:  5'- cGCuCGCGguGCGCAGAUGGcCGGUgucGGAGu -3'
miRNA:   3'- cCG-GCGU--CGUGUCUAUC-GCCGa--CUUC- -5'
10708 5' -55.6 NC_002794.1 + 140304 0.68 0.874914
Target:  5'- cGGCCaaGGC-CuGccGGCGGCUGGAGa -3'
miRNA:   3'- -CCGGcgUCGuGuCuaUCGCCGACUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.