Results 61 - 80 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10708 | 5' | -55.6 | NC_002794.1 | + | 37579 | 0.69 | 0.819633 |
Target: 5'- aGCCGUcGaACAGAUAGCGGUcgcgaUGGAGc -3' miRNA: 3'- cCGGCGuCgUGUCUAUCGCCG-----ACUUC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 140304 | 0.68 | 0.874914 |
Target: 5'- cGGCCaaGGC-CuGccGGCGGCUGGAGa -3' miRNA: 3'- -CCGGcgUCGuGuCuaUCGCCGACUUC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 138992 | 0.68 | 0.881999 |
Target: 5'- gGGCCuGC-GCGaAGGcuuuGCGGCUGAAGa -3' miRNA: 3'- -CCGG-CGuCGUgUCUau--CGCCGACUUC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 160004 | 0.68 | 0.881999 |
Target: 5'- cGCuCGCGguGCGCAGAUGGcCGGUgucGGAGu -3' miRNA: 3'- cCG-GCGU--CGUGUCUAUC-GCCGa--CUUC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 152588 | 0.68 | 0.881999 |
Target: 5'- cGGCCGCcacgucccugcGGCGCGGGcccaAGCGGCg---- -3' miRNA: 3'- -CCGGCG-----------UCGUGUCUa---UCGCCGacuuc -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 118369 | 0.68 | 0.881999 |
Target: 5'- aGGUCGCGGUAgAGAUacugccgcucGGCGGCg---- -3' miRNA: 3'- -CCGGCGUCGUgUCUA----------UCGCCGacuuc -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 100456 | 0.68 | 0.881999 |
Target: 5'- cGGCgGCGGCGCcuucccGGUGGCGGagaacCUGGAc -3' miRNA: 3'- -CCGgCGUCGUGu-----CUAUCGCC-----GACUUc -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 143122 | 0.68 | 0.852391 |
Target: 5'- cGGCCGUGGCGCAGGUcucgGGCcacuccccGCgGAAGu -3' miRNA: 3'- -CCGGCGUCGUGUCUA----UCGc-------CGaCUUC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 70273 | 0.68 | 0.852391 |
Target: 5'- aGGCCGCgaaGGC-CGGAgAGCaGGCcGggGg -3' miRNA: 3'- -CCGGCG---UCGuGUCUaUCG-CCGaCuuC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 192156 | 0.68 | 0.860104 |
Target: 5'- cGGUCGCGGCGgagccugcggUAGGUccggcgaaGGCGGCcGAAGc -3' miRNA: 3'- -CCGGCGUCGU----------GUCUA--------UCGCCGaCUUC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 95023 | 0.68 | 0.867614 |
Target: 5'- cGGCUguGCGGCAUcucgccGGUGGCGGCgcccGAGGc -3' miRNA: 3'- -CCGG--CGUCGUGu-----CUAUCGCCGa---CUUC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 107388 | 0.68 | 0.867614 |
Target: 5'- cGGCCGUcgggcuGGCGCuGAUccucGGCGGCUa--- -3' miRNA: 3'- -CCGGCG------UCGUGuCUA----UCGCCGAcuuc -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 48266 | 0.68 | 0.874914 |
Target: 5'- -cCCGCAGCACAGGcAG-GGCUccgccguccGAAGg -3' miRNA: 3'- ccGGCGUCGUGUCUaUCgCCGA---------CUUC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 98357 | 0.68 | 0.881999 |
Target: 5'- cGGCCGaucgccGCGCGGcUGGCGGgaGAc- -3' miRNA: 3'- -CCGGCgu----CGUGUCuAUCGCCgaCUuc -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 76536 | 0.67 | 0.888866 |
Target: 5'- cGGCCGCGGCGCcGAc-GCGGUc---- -3' miRNA: 3'- -CCGGCGUCGUGuCUauCGCCGacuuc -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 55949 | 0.67 | 0.888866 |
Target: 5'- uGCCGCAGCaggaACGGGUAGUaGUcGAGGu -3' miRNA: 3'- cCGGCGUCG----UGUCUAUCGcCGaCUUC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 87244 | 0.67 | 0.888866 |
Target: 5'- gGGUgGgGGUGCAGGccgGGCGGgUGggGg -3' miRNA: 3'- -CCGgCgUCGUGUCUa--UCGCCgACuuC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 87118 | 0.67 | 0.888866 |
Target: 5'- gGGUgGgGGUGCAGGccgGGCGGgUGggGg -3' miRNA: 3'- -CCGgCgUCGUGUCUa--UCGCCgACuuC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 87160 | 0.67 | 0.888866 |
Target: 5'- gGGUgGgGGUGCAGGccgGGCGGgUGggGg -3' miRNA: 3'- -CCGgCgUCGUGUCUa--UCGCCgACuuC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 87202 | 0.67 | 0.888866 |
Target: 5'- gGGUgGgGGUGCAGGccgGGCGGgUGggGg -3' miRNA: 3'- -CCGgCgUCGUGUCUa--UCGCCgACuuC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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