miRNA display CGI


Results 101 - 120 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 115974 0.66 0.944825
Target:  5'- gGGgaGCGGgACGGggAGCGGCgccgcGGAGa -3'
miRNA:   3'- -CCggCGUCgUGUCuaUCGCCGa----CUUC- -5'
10708 5' -55.6 NC_002794.1 + 94281 0.66 0.944825
Target:  5'- cGG-CGCGGCccgaGCGGggGGCGGCUcGGGc -3'
miRNA:   3'- -CCgGCGUCG----UGUCuaUCGCCGAcUUC- -5'
10708 5' -55.6 NC_002794.1 + 58543 0.66 0.944825
Target:  5'- cGCCGCGGCGCGcgcgcuGcUGGCGcGCUGc-- -3'
miRNA:   3'- cCGGCGUCGUGU------CuAUCGC-CGACuuc -5'
10708 5' -55.6 NC_002794.1 + 103578 0.66 0.949132
Target:  5'- uGGCCgacgaGCAGCggucggGCAGGcAGCGGCggcacgcgcucuUGGAGa -3'
miRNA:   3'- -CCGG-----CGUCG------UGUCUaUCGCCG------------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 115709 0.66 0.935513
Target:  5'- cGGUCGC-GUACAGGagccacugGGCGGUcGggGg -3'
miRNA:   3'- -CCGGCGuCGUGUCUa-------UCGCCGaCuuC- -5'
10708 5' -55.6 NC_002794.1 + 153418 0.66 0.949132
Target:  5'- cGCCGC-GCGCGGAgccgAGCugGGCgUGGAc -3'
miRNA:   3'- cCGGCGuCGUGUCUa---UCG--CCG-ACUUc -5'
10708 5' -55.6 NC_002794.1 + 89714 0.66 0.944825
Target:  5'- cGCCGCGGUGCcGAUccgcGCGGCgucgguccuUGggGa -3'
miRNA:   3'- cCGGCGUCGUGuCUAu---CGCCG---------ACuuC- -5'
10708 5' -55.6 NC_002794.1 + 186312 0.66 0.942129
Target:  5'- cGCCGCGGCGCGcucguccuccaacacGAUcgacGGCGGCg---- -3'
miRNA:   3'- cCGGCGUCGUGU---------------CUA----UCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 63451 0.66 0.935513
Target:  5'- cGGCCGCGGCGgCGacGAUgacgacgaGGCGGCg---- -3'
miRNA:   3'- -CCGGCGUCGU-GU--CUA--------UCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 49061 0.66 0.935513
Target:  5'- gGGCgCGCAGCACGacucGCGGUaccaGAAGa -3'
miRNA:   3'- -CCG-GCGUCGUGUcuauCGCCGa---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 143285 0.66 0.925259
Target:  5'- cGGCCGCucggGGUcggGCGGGUGcagcGCGGCgggaugGAAGu -3'
miRNA:   3'- -CCGGCG----UCG---UGUCUAU----CGCCGa-----CUUC- -5'
10708 5' -55.6 NC_002794.1 + 138588 0.66 0.930504
Target:  5'- aGGCgCGuCGGCGCGGcggagAGCGGCUu--- -3'
miRNA:   3'- -CCG-GC-GUCGUGUCua---UCGCCGAcuuc -5'
10708 5' -55.6 NC_002794.1 + 32310 0.66 0.925259
Target:  5'- cGGCCGC-GC-CGGcc-GCGGCcGGAGa -3'
miRNA:   3'- -CCGGCGuCGuGUCuauCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 50586 0.66 0.925259
Target:  5'- cGCgGCGGCugGG-UGGCcGGCgccgGggGg -3'
miRNA:   3'- cCGgCGUCGugUCuAUCG-CCGa---CuuC- -5'
10708 5' -55.6 NC_002794.1 + 57595 0.66 0.925259
Target:  5'- aGGCCGC-GCGCguggccaccgAGAaGGCGGCcGAc- -3'
miRNA:   3'- -CCGGCGuCGUG----------UCUaUCGCCGaCUuc -5'
10708 5' -55.6 NC_002794.1 + 115565 0.66 0.925259
Target:  5'- aGCCgaGCAGCuCGGcgaacgggacGUAGCGGCUGcGGu -3'
miRNA:   3'- cCGG--CGUCGuGUC----------UAUCGCCGACuUC- -5'
10708 5' -55.6 NC_002794.1 + 112385 0.66 0.925259
Target:  5'- cGGCaCGCAGgGCGGcgaucuUGGCGcGCUGcAGc -3'
miRNA:   3'- -CCG-GCGUCgUGUCu-----AUCGC-CGACuUC- -5'
10708 5' -55.6 NC_002794.1 + 122746 0.66 0.92999
Target:  5'- aGGCCGCGGCAUccucgagcuGAUcgagcgcuccgcgAGCGGCcucgacggcgUGGAGu -3'
miRNA:   3'- -CCGGCGUCGUGu--------CUA-------------UCGCCG----------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 138062 0.66 0.935513
Target:  5'- uGGCCagGCAGguCAGu---CGGUUGAAGg -3'
miRNA:   3'- -CCGG--CGUCguGUCuaucGCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 108330 0.66 0.935513
Target:  5'- uGGaCgGCGGCGCAGGaggaGGUGGC-GGAGc -3'
miRNA:   3'- -CC-GgCGUCGUGUCUa---UCGCCGaCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.