miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 123276 0.7 0.756152
Target:  5'- gGGCCGCGGUcgucGCGGGagaccuGCuGCUGGAGg -3'
miRNA:   3'- -CCGGCGUCG----UGUCUau----CGcCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 38465 0.7 0.756152
Target:  5'- cGGCCGCGGCGCGcccuuuaugGGCGGagGAAGc -3'
miRNA:   3'- -CCGGCGUCGUGUcua------UCGCCgaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 125747 0.7 0.765616
Target:  5'- gGGCCGCGGgACGGcggccGGCGGCUc--- -3'
miRNA:   3'- -CCGGCGUCgUGUCua---UCGCCGAcuuc -5'
10708 5' -55.6 NC_002794.1 + 37748 0.7 0.765616
Target:  5'- cGGCgGCGGCGCGGcgGcGCcGGCgGGAGc -3'
miRNA:   3'- -CCGgCGUCGUGUCuaU-CG-CCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 129051 0.7 0.774964
Target:  5'- cGGUCGUGGCGCGcgacGGUGugucGCGGCUGgcGg -3'
miRNA:   3'- -CCGGCGUCGUGU----CUAU----CGCCGACuuC- -5'
10708 5' -55.6 NC_002794.1 + 21900 0.7 0.774964
Target:  5'- cGGCCuGCGuCGguGGUGGCGGC-GGAGa -3'
miRNA:   3'- -CCGG-CGUcGUguCUAUCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 87058 0.7 0.783269
Target:  5'- gGGCCGgguccuguagcgaCAGCACGGugcaggccgGGCGGgUGggGg -3'
miRNA:   3'- -CCGGC-------------GUCGUGUCua-------UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 177957 0.7 0.784185
Target:  5'- aGGUCGguGgACGGugGUGGaCGGUUGGAGg -3'
miRNA:   3'- -CCGGCguCgUGUC--UAUC-GCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 106980 0.7 0.784185
Target:  5'- cGGCgGcCGGCACGGcgGUGGCGGCg---- -3'
miRNA:   3'- -CCGgC-GUCGUGUC--UAUCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 124530 0.7 0.792369
Target:  5'- aGCCGCcgacgcuGGCGCu----GCGGCUGAAGc -3'
miRNA:   3'- cCGGCG-------UCGUGucuauCGCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 176197 0.7 0.793271
Target:  5'- --aCGCuGUACGGGUGGCGGaugGAAGg -3'
miRNA:   3'- ccgGCGuCGUGUCUAUCGCCga-CUUC- -5'
10708 5' -55.6 NC_002794.1 + 95821 0.69 0.809258
Target:  5'- cGGCgGCGGC-CGGGggAGCGGCggcggcggccggGGAGg -3'
miRNA:   3'- -CCGgCGUCGuGUCUa-UCGCCGa-----------CUUC- -5'
10708 5' -55.6 NC_002794.1 + 55301 0.69 0.811003
Target:  5'- cGGCgGCGGCgucgcgGCGGGcgcgGGCGGCUuccGAGGa -3'
miRNA:   3'- -CCGgCGUCG------UGUCUa---UCGCCGA---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 105401 0.69 0.811003
Target:  5'- cGGCCGCcGCGCGGAUcuCGGCc---- -3'
miRNA:   3'- -CCGGCGuCGUGUCUAucGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 101586 0.69 0.819633
Target:  5'- cGCCGCGGC-CGGGggGGCGGgUGccGg -3'
miRNA:   3'- cCGGCGUCGuGUCUa-UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 37579 0.69 0.819633
Target:  5'- aGCCGUcGaACAGAUAGCGGUcgcgaUGGAGc -3'
miRNA:   3'- cCGGCGuCgUGUCUAUCGCCG-----ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 113615 0.69 0.828094
Target:  5'- cGCCGCGGC-CAGGUucaGGUUGAAc -3'
miRNA:   3'- cCGGCGUCGuGUCUAucgCCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 123987 0.69 0.83143
Target:  5'- cGCCGUGGCGCcggucaucuacgugaAGcgGGCGGCcgcgGAAGa -3'
miRNA:   3'- cCGGCGUCGUG---------------UCuaUCGCCGa---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 120063 0.69 0.835559
Target:  5'- cGGCCGCGGaggccgaCGCGGcgGUGGCGGCg---- -3'
miRNA:   3'- -CCGGCGUC-------GUGUC--UAUCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 114753 0.69 0.836379
Target:  5'- cGCCGCccgccGGCGCcGGUccucGGCGGCgagGAGGa -3'
miRNA:   3'- cCGGCG-----UCGUGuCUA----UCGCCGa--CUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.