Results 81 - 100 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10708 | 5' | -55.6 | NC_002794.1 | + | 185571 | 0.67 | 0.888866 |
Target: 5'- uGCCGCGGCAgGGcgcGCGGCUc--- -3' miRNA: 3'- cCGGCGUCGUgUCuauCGCCGAcuuc -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 194112 | 0.67 | 0.899385 |
Target: 5'- uGCUGCGGCACcgcgcgcaCGGCUGAGGc -3' miRNA: 3'- cCGGCGUCGUGucuauc--GCCGACUUC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 70069 | 0.67 | 0.901923 |
Target: 5'- cGGCCGCAGcCGCAGcaaGGCGacgcaggccgcGCaGAAGa -3' miRNA: 3'- -CCGGCGUC-GUGUCua-UCGC-----------CGaCUUC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 158533 | 0.67 | 0.901923 |
Target: 5'- -cCCGCAGCAgAGGacGCGGCcGAGa -3' miRNA: 3'- ccGGCGUCGUgUCUauCGCCGaCUUc -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 126243 | 0.67 | 0.901923 |
Target: 5'- uGGCgauCGUGGCGCGcGAggucGGCGGCUGGc- -3' miRNA: 3'- -CCG---GCGUCGUGU-CUa---UCGCCGACUuc -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 88079 | 0.67 | 0.901923 |
Target: 5'- gGGCCGCGGUuugaACGGGgcGUGGUgaUGAGc -3' miRNA: 3'- -CCGGCGUCG----UGUCUauCGCCG--ACUUc -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 122344 | 0.67 | 0.90689 |
Target: 5'- uGGCCGUccggAGCACcgAGGUcugcuacGGCGGCagcuaccUGAAGg -3' miRNA: 3'- -CCGGCG----UCGUG--UCUA-------UCGCCG-------ACUUC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 100800 | 0.67 | 0.911708 |
Target: 5'- cGGCCGCuucuGCGCcuacgugccgGGCGGCgGggGc -3' miRNA: 3'- -CCGGCGu---CGUGucua------UCGCCGaCuuC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 121748 | 0.67 | 0.91406 |
Target: 5'- cGGCgGCgAGaCGgAGAUGGCGGUgcccGAGGc -3' miRNA: 3'- -CCGgCG-UC-GUgUCUAUCGCCGa---CUUC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 142919 | 0.67 | 0.91406 |
Target: 5'- gGGCCGgAGCA-GGAUguagaagcaGGUGGCcGAGGg -3' miRNA: 3'- -CCGGCgUCGUgUCUA---------UCGCCGaCUUC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 117841 | 0.67 | 0.91406 |
Target: 5'- aGCaGCGGCACGGAgcgcgacGGgGGCUGGc- -3' miRNA: 3'- cCGgCGUCGUGUCUa------UCgCCGACUuc -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 32875 | 0.67 | 0.91406 |
Target: 5'- gGGCgGCGGCgGCGGc-GGCGGCaucaUGGAGc -3' miRNA: 3'- -CCGgCGUCG-UGUCuaUCGCCG----ACUUC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 114341 | 0.67 | 0.919217 |
Target: 5'- cGCCGCAGCGgcucguccgccgcCAGGgc-CGGCUGcAGGg -3' miRNA: 3'- cCGGCGUCGU-------------GUCUaucGCCGAC-UUC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 116129 | 0.67 | 0.919778 |
Target: 5'- cGCCGCGGCgGCGGc-GGCGGCg---- -3' miRNA: 3'- cCGGCGUCG-UGUCuaUCGCCGacuuc -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 111656 | 0.67 | 0.919778 |
Target: 5'- cGGCCGCGGCcacgcccguCGGAUA-CGGUcguccaggccgUGAAGa -3' miRNA: 3'- -CCGGCGUCGu--------GUCUAUcGCCG-----------ACUUC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 70677 | 0.67 | 0.919778 |
Target: 5'- cGCCGCGGCGguGAcguccugucGCcGCUGggGg -3' miRNA: 3'- cCGGCGUCGUguCUau-------CGcCGACuuC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 107880 | 0.67 | 0.919778 |
Target: 5'- cGGagGCGGCGCGGcggguGCGGCUGccGg -3' miRNA: 3'- -CCggCGUCGUGUCuau--CGCCGACuuC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 49756 | 0.66 | 0.923639 |
Target: 5'- aGGCCGCucGCACgcgcucgucuccccGGA-GGCGGUUGGGc -3' miRNA: 3'- -CCGGCGu-CGUG--------------UCUaUCGCCGACUUc -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 50586 | 0.66 | 0.925259 |
Target: 5'- cGCgGCGGCugGG-UGGCcGGCgccgGggGg -3' miRNA: 3'- cCGgCGUCGugUCuAUCG-CCGa---CuuC- -5' |
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10708 | 5' | -55.6 | NC_002794.1 | + | 57595 | 0.66 | 0.925259 |
Target: 5'- aGGCCGC-GCGCguggccaccgAGAaGGCGGCcGAc- -3' miRNA: 3'- -CCGGCGuCGUG----------UCUaUCGCCGaCUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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