Results 121 - 129 of 129 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 10708 | 5' | -55.6 | NC_002794.1 | + | 94281 | 0.66 | 0.944825 |
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Target: 5'- cGG-CGCGGCccgaGCGGggGGCGGCUcGGGc -3' miRNA: 3'- -CCgGCGUCG----UGUCuaUCGCCGAcUUC- -5' |
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| 10708 | 5' | -55.6 | NC_002794.1 | + | 115974 | 0.66 | 0.944825 |
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Target: 5'- gGGgaGCGGgACGGggAGCGGCgccgcGGAGa -3' miRNA: 3'- -CCggCGUCgUGUCuaUCGCCGa----CUUC- -5' |
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| 10708 | 5' | -55.6 | NC_002794.1 | + | 91597 | 0.66 | 0.944825 |
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Target: 5'- uGGCCGCuGGUGCGc---GCGGCcGAGGg -3' miRNA: 3'- -CCGGCG-UCGUGUcuauCGCCGaCUUC- -5' |
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| 10708 | 5' | -55.6 | NC_002794.1 | + | 33482 | 0.66 | 0.944825 |
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Target: 5'- cGCUGCAGCugggcaacauGCAGA-AGCuGCUGGAc -3' miRNA: 3'- cCGGCGUCG----------UGUCUaUCGcCGACUUc -5' |
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| 10708 | 5' | -55.6 | NC_002794.1 | + | 182741 | 0.66 | 0.949132 |
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Target: 5'- cGGCCccagaaagacGCGGUACAGGUAGCaGCc---- -3' miRNA: 3'- -CCGG----------CGUCGUGUCUAUCGcCGacuuc -5' |
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| 10708 | 5' | -55.6 | NC_002794.1 | + | 103578 | 0.66 | 0.949132 |
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Target: 5'- uGGCCgacgaGCAGCggucggGCAGGcAGCGGCggcacgcgcucuUGGAGa -3' miRNA: 3'- -CCGG-----CGUCG------UGUCUaUCGCCG------------ACUUC- -5' |
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| 10708 | 5' | -55.6 | NC_002794.1 | + | 111136 | 0.66 | 0.949132 |
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Target: 5'- cGGCCGguGCuccACGcGGUAGCGGgUcAGGc -3' miRNA: 3'- -CCGGCguCG---UGU-CUAUCGCCgAcUUC- -5' |
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| 10708 | 5' | -55.6 | NC_002794.1 | + | 153418 | 0.66 | 0.949132 |
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Target: 5'- cGCCGC-GCGCGGAgccgAGCugGGCgUGGAc -3' miRNA: 3'- cCGGCGuCGUGUCUa---UCG--CCG-ACUUc -5' |
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| 10708 | 5' | -55.6 | NC_002794.1 | + | 75374 | 0.66 | 0.949132 |
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Target: 5'- cGCCGCGGC-CGGc-GGCGGCg---- -3' miRNA: 3'- cCGGCGUCGuGUCuaUCGCCGacuuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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