miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 138992 0.68 0.881999
Target:  5'- gGGCCuGC-GCGaAGGcuuuGCGGCUGAAGa -3'
miRNA:   3'- -CCGG-CGuCGUgUCUau--CGCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 140304 0.68 0.874914
Target:  5'- cGGCCaaGGC-CuGccGGCGGCUGGAGa -3'
miRNA:   3'- -CCGGcgUCGuGuCuaUCGCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 48266 0.68 0.874914
Target:  5'- -cCCGCAGCACAGGcAG-GGCUccgccguccGAAGg -3'
miRNA:   3'- ccGGCGUCGUGUCUaUCgCCGA---------CUUC- -5'
10708 5' -55.6 NC_002794.1 + 95023 0.68 0.867614
Target:  5'- cGGCUguGCGGCAUcucgccGGUGGCGGCgcccGAGGc -3'
miRNA:   3'- -CCGG--CGUCGUGu-----CUAUCGCCGa---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 107388 0.68 0.867614
Target:  5'- cGGCCGUcgggcuGGCGCuGAUccucGGCGGCUa--- -3'
miRNA:   3'- -CCGGCG------UCGUGuCUA----UCGCCGAcuuc -5'
10708 5' -55.6 NC_002794.1 + 192156 0.68 0.860104
Target:  5'- cGGUCGCGGCGgagccugcggUAGGUccggcgaaGGCGGCcGAAGc -3'
miRNA:   3'- -CCGGCGUCGU----------GUCUA--------UCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 70273 0.68 0.852391
Target:  5'- aGGCCGCgaaGGC-CGGAgAGCaGGCcGggGg -3'
miRNA:   3'- -CCGGCG---UCGuGUCUaUCG-CCGaCuuC- -5'
10708 5' -55.6 NC_002794.1 + 143122 0.68 0.852391
Target:  5'- cGGCCGUGGCGCAGGUcucgGGCcacuccccGCgGAAGu -3'
miRNA:   3'- -CCGGCGUCGUGUCUA----UCGc-------CGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 108178 0.69 0.84448
Target:  5'- cGCCGCGacGCGCGGAcugcgAGCGGCg---- -3'
miRNA:   3'- cCGGCGU--CGUGUCUa----UCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 114753 0.69 0.836379
Target:  5'- cGCCGCccgccGGCGCcGGUccucGGCGGCgagGAGGa -3'
miRNA:   3'- cCGGCG-----UCGUGuCUA----UCGCCGa--CUUC- -5'
10708 5' -55.6 NC_002794.1 + 120063 0.69 0.835559
Target:  5'- cGGCCGCGGaggccgaCGCGGcgGUGGCGGCg---- -3'
miRNA:   3'- -CCGGCGUC-------GUGUC--UAUCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 123987 0.69 0.83143
Target:  5'- cGCCGUGGCGCcggucaucuacgugaAGcgGGCGGCcgcgGAAGa -3'
miRNA:   3'- cCGGCGUCGUG---------------UCuaUCGCCGa---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 113615 0.69 0.828094
Target:  5'- cGCCGCGGC-CAGGUucaGGUUGAAc -3'
miRNA:   3'- cCGGCGUCGuGUCUAucgCCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 101586 0.69 0.819633
Target:  5'- cGCCGCGGC-CGGGggGGCGGgUGccGg -3'
miRNA:   3'- cCGGCGUCGuGUCUa-UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 37579 0.69 0.819633
Target:  5'- aGCCGUcGaACAGAUAGCGGUcgcgaUGGAGc -3'
miRNA:   3'- cCGGCGuCgUGUCUAUCGCCG-----ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 105401 0.69 0.811003
Target:  5'- cGGCCGCcGCGCGGAUcuCGGCc---- -3'
miRNA:   3'- -CCGGCGuCGUGUCUAucGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 55301 0.69 0.811003
Target:  5'- cGGCgGCGGCgucgcgGCGGGcgcgGGCGGCUuccGAGGa -3'
miRNA:   3'- -CCGgCGUCG------UGUCUa---UCGCCGA---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 95821 0.69 0.809258
Target:  5'- cGGCgGCGGC-CGGGggAGCGGCggcggcggccggGGAGg -3'
miRNA:   3'- -CCGgCGUCGuGUCUa-UCGCCGa-----------CUUC- -5'
10708 5' -55.6 NC_002794.1 + 176197 0.7 0.793271
Target:  5'- --aCGCuGUACGGGUGGCGGaugGAAGg -3'
miRNA:   3'- ccgGCGuCGUGUCUAUCGCCga-CUUC- -5'
10708 5' -55.6 NC_002794.1 + 124530 0.7 0.792369
Target:  5'- aGCCGCcgacgcuGGCGCu----GCGGCUGAAGc -3'
miRNA:   3'- cCGGCG-------UCGUGucuauCGCCGACUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.