miRNA display CGI


Results 81 - 100 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 106980 0.7 0.784185
Target:  5'- cGGCgGcCGGCACGGcgGUGGCGGCg---- -3'
miRNA:   3'- -CCGgC-GUCGUGUC--UAUCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 177957 0.7 0.784185
Target:  5'- aGGUCGguGgACGGugGUGGaCGGUUGGAGg -3'
miRNA:   3'- -CCGGCguCgUGUC--UAUC-GCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 87058 0.7 0.783269
Target:  5'- gGGCCGgguccuguagcgaCAGCACGGugcaggccgGGCGGgUGggGg -3'
miRNA:   3'- -CCGGC-------------GUCGUGUCua-------UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 21900 0.7 0.774964
Target:  5'- cGGCCuGCGuCGguGGUGGCGGC-GGAGa -3'
miRNA:   3'- -CCGG-CGUcGUguCUAUCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 129051 0.7 0.774964
Target:  5'- cGGUCGUGGCGCGcgacGGUGugucGCGGCUGgcGg -3'
miRNA:   3'- -CCGGCGUCGUGU----CUAU----CGCCGACuuC- -5'
10708 5' -55.6 NC_002794.1 + 125747 0.7 0.765616
Target:  5'- gGGCCGCGGgACGGcggccGGCGGCUc--- -3'
miRNA:   3'- -CCGGCGUCgUGUCua---UCGCCGAcuuc -5'
10708 5' -55.6 NC_002794.1 + 37748 0.7 0.765616
Target:  5'- cGGCgGCGGCGCGGcgGcGCcGGCgGGAGc -3'
miRNA:   3'- -CCGgCGUCGUGUCuaU-CG-CCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 123276 0.7 0.756152
Target:  5'- gGGCCGCGGUcgucGCGGGagaccuGCuGCUGGAGg -3'
miRNA:   3'- -CCGGCGUCG----UGUCUau----CGcCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 38465 0.7 0.756152
Target:  5'- cGGCCGCGGCGCGcccuuuaugGGCGGagGAAGc -3'
miRNA:   3'- -CCGGCGUCGUGUcua------UCGCCgaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 188251 0.71 0.746579
Target:  5'- cGGCgGCGGCGgcGGUAGCGGCgGGc- -3'
miRNA:   3'- -CCGgCGUCGUguCUAUCGCCGaCUuc -5'
10708 5' -55.6 NC_002794.1 + 104519 0.71 0.746579
Target:  5'- gGGCUGaGGCGCGGGUGGC-GCggGAAGa -3'
miRNA:   3'- -CCGGCgUCGUGUCUAUCGcCGa-CUUC- -5'
10708 5' -55.6 NC_002794.1 + 192018 0.71 0.745616
Target:  5'- uGGCCGCGGCugcuguuucugugGCGGc-GGCGGCUGc-- -3'
miRNA:   3'- -CCGGCGUCG-------------UGUCuaUCGCCGACuuc -5'
10708 5' -55.6 NC_002794.1 + 55270 0.71 0.736907
Target:  5'- aGCCGgGGgGCGGcgGUGGCGGCgacGAGGg -3'
miRNA:   3'- cCGGCgUCgUGUC--UAUCGCCGa--CUUC- -5'
10708 5' -55.6 NC_002794.1 + 112456 0.71 0.736907
Target:  5'- cGG-CGCAGCGuCcGGUAGCGGCucUGGAGc -3'
miRNA:   3'- -CCgGCGUCGU-GuCUAUCGCCG--ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 95783 0.71 0.727144
Target:  5'- cGGCCGgGGCG-AGAggcGCGGCgGAGGa -3'
miRNA:   3'- -CCGGCgUCGUgUCUau-CGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 190030 0.71 0.727144
Target:  5'- cGGCCgGUAGCGCAcGUAGC-GCUGAc- -3'
miRNA:   3'- -CCGG-CGUCGUGUcUAUCGcCGACUuc -5'
10708 5' -55.6 NC_002794.1 + 129931 0.71 0.727144
Target:  5'- aGGCCGUGGCgACGGcggcGGCGGCggcucUGGAGa -3'
miRNA:   3'- -CCGGCGUCG-UGUCua--UCGCCG-----ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 118226 0.71 0.727144
Target:  5'- cGGCCacGCAGCucuggaGGAUgucGGCGgGCUGGAGg -3'
miRNA:   3'- -CCGG--CGUCGug----UCUA---UCGC-CGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 56325 0.71 0.7173
Target:  5'- cGGCCGUGGC-CGGcgAcGCGGC-GAAGa -3'
miRNA:   3'- -CCGGCGUCGuGUCuaU-CGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 112356 0.71 0.707385
Target:  5'- cGGCgGCGGgGCGGggAGCuGCUGGAa -3'
miRNA:   3'- -CCGgCGUCgUGUCuaUCGcCGACUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.