miRNA display CGI


Results 101 - 120 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 112356 0.71 0.707385
Target:  5'- cGGCgGCGGgGCGGggAGCuGCUGGAa -3'
miRNA:   3'- -CCGgCGUCgUGUCuaUCGcCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 113883 0.71 0.707385
Target:  5'- cGGCCGCGGCGCGcGUcggcGCGGuCUGcAGGa -3'
miRNA:   3'- -CCGGCGUCGUGUcUAu---CGCC-GAC-UUC- -5'
10708 5' -55.6 NC_002794.1 + 142367 0.71 0.697407
Target:  5'- aGGCgGCGGagGCGGAgggAGCGGC-GGAGa -3'
miRNA:   3'- -CCGgCGUCg-UGUCUa--UCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 47791 0.72 0.687374
Target:  5'- cGGCCGCAGUACAcGGUcucggcgaacaGGCGGaC-GAGGg -3'
miRNA:   3'- -CCGGCGUCGUGU-CUA-----------UCGCC-GaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 186208 0.72 0.667182
Target:  5'- gGGCCcCAGgGCAGAUGGCGGUccGGGu -3'
miRNA:   3'- -CCGGcGUCgUGUCUAUCGCCGacUUC- -5'
10708 5' -55.6 NC_002794.1 + 80407 0.72 0.667182
Target:  5'- cGCCGCGGCcCAGGUGGCgccgGGC-GggGc -3'
miRNA:   3'- cCGGCGUCGuGUCUAUCG----CCGaCuuC- -5'
10708 5' -55.6 NC_002794.1 + 123329 0.72 0.657039
Target:  5'- gGGCCGCAGCugGG--GGUGGCg---- -3'
miRNA:   3'- -CCGGCGUCGugUCuaUCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 110625 0.72 0.650944
Target:  5'- aGCCGCGGCGCcgcggcggcggggucGGGUuucuccGGCGGCUGcAGa -3'
miRNA:   3'- cCGGCGUCGUG---------------UCUA------UCGCCGACuUC- -5'
10708 5' -55.6 NC_002794.1 + 98933 0.72 0.646877
Target:  5'- uGGgCGCGGC-CGGGaAGgGGCUGggGc -3'
miRNA:   3'- -CCgGCGUCGuGUCUaUCgCCGACuuC- -5'
10708 5' -55.6 NC_002794.1 + 72419 0.73 0.636703
Target:  5'- cGCCGCGGCGgAGGaggAGCcGGCgGAGGg -3'
miRNA:   3'- cCGGCGUCGUgUCUa--UCG-CCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 137987 0.73 0.636703
Target:  5'- cGCCGCAGCGCuGGU-GCaGCUGGGc -3'
miRNA:   3'- cCGGCGUCGUGuCUAuCGcCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 143061 0.73 0.626526
Target:  5'- aGGCCGUAGCGCccgcGGCGGCagacguagUGGAGg -3'
miRNA:   3'- -CCGGCGUCGUGucuaUCGCCG--------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 117375 0.73 0.616352
Target:  5'- gGGCCGCcuGCACGGuc-GCGGC-GAAGc -3'
miRNA:   3'- -CCGGCGu-CGUGUCuauCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 66866 0.73 0.606191
Target:  5'- aGGCCGCGGCGu-----GCGGCUGAGc -3'
miRNA:   3'- -CCGGCGUCGUgucuauCGCCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 30745 0.73 0.606191
Target:  5'- uGGCCGCGGC-----UGGCGcGCUGGAGg -3'
miRNA:   3'- -CCGGCGUCGugucuAUCGC-CGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 184059 0.73 0.593011
Target:  5'- gGGCCGCGGCgaaGCGGcacgcgcccacgguGUAGCGGCaGAAc -3'
miRNA:   3'- -CCGGCGUCG---UGUC--------------UAUCGCCGaCUUc -5'
10708 5' -55.6 NC_002794.1 + 134166 0.73 0.585933
Target:  5'- uGGCCGUGGCcgcGCGGAUGGCcaccucguaucGGCUGGu- -3'
miRNA:   3'- -CCGGCGUCG---UGUCUAUCG-----------CCGACUuc -5'
10708 5' -55.6 NC_002794.1 + 91761 0.74 0.565807
Target:  5'- gGGCgGCAccGCGCAGGacgGGCuGCUGAAGg -3'
miRNA:   3'- -CCGgCGU--CGUGUCUa--UCGcCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 128804 0.74 0.565807
Target:  5'- -uCCGCGGCACGcguGGUGGCGGCUcGGAc -3'
miRNA:   3'- ccGGCGUCGUGU---CUAUCGCCGA-CUUc -5'
10708 5' -55.6 NC_002794.1 + 140024 0.75 0.497109
Target:  5'- aGGCCGCGGCccccGCGGGcGGCGGgaGAc- -3'
miRNA:   3'- -CCGGCGUCG----UGUCUaUCGCCgaCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.