Results 121 - 129 of 129 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 10708 | 5' | -55.6 | NC_002794.1 | + | 142214 | 0.75 | 0.497109 |
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Target: 5'- cGGCgGCAGCggcgguGCGGggAGCGGCgGAGGc -3' miRNA: 3'- -CCGgCGUCG------UGUCuaUCGCCGaCUUC- -5' |
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| 10708 | 5' | -55.6 | NC_002794.1 | + | 143211 | 0.76 | 0.45956 |
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Target: 5'- cGGUCcCAGCGCAGGUGGCGGaaccacagGAAGa -3' miRNA: 3'- -CCGGcGUCGUGUCUAUCGCCga------CUUC- -5' |
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| 10708 | 5' | -55.6 | NC_002794.1 | + | 94050 | 0.76 | 0.450409 |
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Target: 5'- cGGCgGCGGUGCGGG-GGCGGCgGggGg -3' miRNA: 3'- -CCGgCGUCGUGUCUaUCGCCGaCuuC- -5' |
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| 10708 | 5' | -55.6 | NC_002794.1 | + | 23947 | 0.76 | 0.432412 |
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Target: 5'- cGGCCGCGGCGCAcuuggcuccGAgccAGCGGC-GAGGc -3' miRNA: 3'- -CCGGCGUCGUGU---------CUa--UCGCCGaCUUC- -5' |
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| 10708 | 5' | -55.6 | NC_002794.1 | + | 142319 | 0.77 | 0.389326 |
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Target: 5'- aGGCgGCGGCGCAGGcggcggaGGCGGCgGAGGc -3' miRNA: 3'- -CCGgCGUCGUGUCUa------UCGCCGaCUUC- -5' |
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| 10708 | 5' | -55.6 | NC_002794.1 | + | 156414 | 0.78 | 0.356945 |
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Target: 5'- cGGCCGCGGcCACGGccGGCGGgUGAGa -3' miRNA: 3'- -CCGGCGUC-GUGUCuaUCGCCgACUUc -5' |
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| 10708 | 5' | -55.6 | NC_002794.1 | + | 191870 | 0.78 | 0.349151 |
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Target: 5'- aGGCCgGCGGCGgAGggGGCGGCgGAGGc -3' miRNA: 3'- -CCGG-CGUCGUgUCuaUCGCCGaCUUC- -5' |
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| 10708 | 5' | -55.6 | NC_002794.1 | + | 101264 | 0.8 | 0.271518 |
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Target: 5'- gGGCCGCccccGGCGCcGGUGGCGGCggcggGGAGg -3' miRNA: 3'- -CCGGCG----UCGUGuCUAUCGCCGa----CUUC- -5' |
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| 10708 | 5' | -55.6 | NC_002794.1 | + | 187236 | 1.1 | 0.003116 |
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Target: 5'- uGGCCGCAGCACAGAUAGCGGCUGAAGu -3' miRNA: 3'- -CCGGCGUCGUGUCUAUCGCCGACUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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