miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 91761 0.74 0.565807
Target:  5'- gGGCgGCAccGCGCAGGacgGGCuGCUGAAGg -3'
miRNA:   3'- -CCGgCGU--CGUGUCUa--UCGcCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 94050 0.76 0.450409
Target:  5'- cGGCgGCGGUGCGGG-GGCGGCgGggGg -3'
miRNA:   3'- -CCGgCGUCGUGUCUaUCGCCGaCuuC- -5'
10708 5' -55.6 NC_002794.1 + 94281 0.66 0.944825
Target:  5'- cGG-CGCGGCccgaGCGGggGGCGGCUcGGGc -3'
miRNA:   3'- -CCgGCGUCG----UGUCuaUCGCCGAcUUC- -5'
10708 5' -55.6 NC_002794.1 + 95023 0.68 0.867614
Target:  5'- cGGCUguGCGGCAUcucgccGGUGGCGGCgcccGAGGc -3'
miRNA:   3'- -CCGG--CGUCGUGu-----CUAUCGCCGa---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 95783 0.71 0.727144
Target:  5'- cGGCCGgGGCG-AGAggcGCGGCgGAGGa -3'
miRNA:   3'- -CCGGCgUCGUgUCUau-CGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 95821 0.69 0.809258
Target:  5'- cGGCgGCGGC-CGGGggAGCGGCggcggcggccggGGAGg -3'
miRNA:   3'- -CCGgCGUCGuGUCUa-UCGCCGa-----------CUUC- -5'
10708 5' -55.6 NC_002794.1 + 98357 0.68 0.881999
Target:  5'- cGGCCGaucgccGCGCGGcUGGCGGgaGAc- -3'
miRNA:   3'- -CCGGCgu----CGUGUCuAUCGCCgaCUuc -5'
10708 5' -55.6 NC_002794.1 + 98933 0.72 0.646877
Target:  5'- uGGgCGCGGC-CGGGaAGgGGCUGggGc -3'
miRNA:   3'- -CCgGCGUCGuGUCUaUCgCCGACuuC- -5'
10708 5' -55.6 NC_002794.1 + 100456 0.68 0.881999
Target:  5'- cGGCgGCGGCGCcuucccGGUGGCGGagaacCUGGAc -3'
miRNA:   3'- -CCGgCGUCGUGu-----CUAUCGCC-----GACUUc -5'
10708 5' -55.6 NC_002794.1 + 100800 0.67 0.911708
Target:  5'- cGGCCGCuucuGCGCcuacgugccgGGCGGCgGggGc -3'
miRNA:   3'- -CCGGCGu---CGUGucua------UCGCCGaCuuC- -5'
10708 5' -55.6 NC_002794.1 + 101264 0.8 0.271518
Target:  5'- gGGCCGCccccGGCGCcGGUGGCGGCggcggGGAGg -3'
miRNA:   3'- -CCGGCG----UCGUGuCUAUCGCCGa----CUUC- -5'
10708 5' -55.6 NC_002794.1 + 101586 0.69 0.819633
Target:  5'- cGCCGCGGC-CGGGggGGCGGgUGccGg -3'
miRNA:   3'- cCGGCGUCGuGUCUa-UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 102181 0.66 0.925259
Target:  5'- uGGCgCGCGGCGaGGAccUGGCGGCcgccgugacGGAGg -3'
miRNA:   3'- -CCG-GCGUCGUgUCU--AUCGCCGa--------CUUC- -5'
10708 5' -55.6 NC_002794.1 + 103578 0.66 0.949132
Target:  5'- uGGCCgacgaGCAGCggucggGCAGGcAGCGGCggcacgcgcucuUGGAGa -3'
miRNA:   3'- -CCGG-----CGUCG------UGUCUaUCGCCG------------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 104519 0.71 0.746579
Target:  5'- gGGCUGaGGCGCGGGUGGC-GCggGAAGa -3'
miRNA:   3'- -CCGGCgUCGUGUCUAUCGcCGa-CUUC- -5'
10708 5' -55.6 NC_002794.1 + 105401 0.69 0.811003
Target:  5'- cGGCCGCcGCGCGGAUcuCGGCc---- -3'
miRNA:   3'- -CCGGCGuCGUGUCUAucGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 106980 0.7 0.784185
Target:  5'- cGGCgGcCGGCACGGcgGUGGCGGCg---- -3'
miRNA:   3'- -CCGgC-GUCGUGUC--UAUCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 107388 0.68 0.867614
Target:  5'- cGGCCGUcgggcuGGCGCuGAUccucGGCGGCUa--- -3'
miRNA:   3'- -CCGGCG------UCGUGuCUA----UCGCCGAcuuc -5'
10708 5' -55.6 NC_002794.1 + 107880 0.67 0.919778
Target:  5'- cGGagGCGGCGCGGcggguGCGGCUGccGg -3'
miRNA:   3'- -CCggCGUCGUGUCuau--CGCCGACuuC- -5'
10708 5' -55.6 NC_002794.1 + 108178 0.69 0.84448
Target:  5'- cGCCGCGacGCGCGGAcugcgAGCGGCg---- -3'
miRNA:   3'- cCGGCGU--CGUGUCUa----UCGCCGacuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.