miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 108330 0.66 0.935513
Target:  5'- uGGaCgGCGGCGCAGGaggaGGUGGC-GGAGc -3'
miRNA:   3'- -CC-GgCGUCGUGUCUa---UCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 110625 0.72 0.650944
Target:  5'- aGCCGCGGCGCcgcggcggcggggucGGGUuucuccGGCGGCUGcAGa -3'
miRNA:   3'- cCGGCGUCGUG---------------UCUA------UCGCCGACuUC- -5'
10708 5' -55.6 NC_002794.1 + 111136 0.66 0.949132
Target:  5'- cGGCCGguGCuccACGcGGUAGCGGgUcAGGc -3'
miRNA:   3'- -CCGGCguCG---UGU-CUAUCGCCgAcUUC- -5'
10708 5' -55.6 NC_002794.1 + 111656 0.67 0.919778
Target:  5'- cGGCCGCGGCcacgcccguCGGAUA-CGGUcguccaggccgUGAAGa -3'
miRNA:   3'- -CCGGCGUCGu--------GUCUAUcGCCG-----------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 112356 0.71 0.707385
Target:  5'- cGGCgGCGGgGCGGggAGCuGCUGGAa -3'
miRNA:   3'- -CCGgCGUCgUGUCuaUCGcCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 112385 0.66 0.925259
Target:  5'- cGGCaCGCAGgGCGGcgaucuUGGCGcGCUGcAGc -3'
miRNA:   3'- -CCG-GCGUCgUGUCu-----AUCGC-CGACuUC- -5'
10708 5' -55.6 NC_002794.1 + 112456 0.71 0.736907
Target:  5'- cGG-CGCAGCGuCcGGUAGCGGCucUGGAGc -3'
miRNA:   3'- -CCgGCGUCGU-GuCUAUCGCCG--ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 113615 0.69 0.828094
Target:  5'- cGCCGCGGC-CAGGUucaGGUUGAAc -3'
miRNA:   3'- cCGGCGUCGuGUCUAucgCCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 113883 0.71 0.707385
Target:  5'- cGGCCGCGGCGCGcGUcggcGCGGuCUGcAGGa -3'
miRNA:   3'- -CCGGCGUCGUGUcUAu---CGCC-GAC-UUC- -5'
10708 5' -55.6 NC_002794.1 + 114341 0.67 0.919217
Target:  5'- cGCCGCAGCGgcucguccgccgcCAGGgc-CGGCUGcAGGg -3'
miRNA:   3'- cCGGCGUCGU-------------GUCUaucGCCGAC-UUC- -5'
10708 5' -55.6 NC_002794.1 + 114753 0.69 0.836379
Target:  5'- cGCCGCccgccGGCGCcGGUccucGGCGGCgagGAGGa -3'
miRNA:   3'- cCGGCG-----UCGUGuCUA----UCGCCGa--CUUC- -5'
10708 5' -55.6 NC_002794.1 + 115565 0.66 0.925259
Target:  5'- aGCCgaGCAGCuCGGcgaacgggacGUAGCGGCUGcGGu -3'
miRNA:   3'- cCGG--CGUCGuGUC----------UAUCGCCGACuUC- -5'
10708 5' -55.6 NC_002794.1 + 115709 0.66 0.935513
Target:  5'- cGGUCGC-GUACAGGagccacugGGCGGUcGggGg -3'
miRNA:   3'- -CCGGCGuCGUGUCUa-------UCGCCGaCuuC- -5'
10708 5' -55.6 NC_002794.1 + 115974 0.66 0.944825
Target:  5'- gGGgaGCGGgACGGggAGCGGCgccgcGGAGa -3'
miRNA:   3'- -CCggCGUCgUGUCuaUCGCCGa----CUUC- -5'
10708 5' -55.6 NC_002794.1 + 116129 0.67 0.919778
Target:  5'- cGCCGCGGCgGCGGc-GGCGGCg---- -3'
miRNA:   3'- cCGGCGUCG-UGUCuaUCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 117375 0.73 0.616352
Target:  5'- gGGCCGCcuGCACGGuc-GCGGC-GAAGc -3'
miRNA:   3'- -CCGGCGu-CGUGUCuauCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 117841 0.67 0.91406
Target:  5'- aGCaGCGGCACGGAgcgcgacGGgGGCUGGc- -3'
miRNA:   3'- cCGgCGUCGUGUCUa------UCgCCGACUuc -5'
10708 5' -55.6 NC_002794.1 + 118226 0.71 0.727144
Target:  5'- cGGCCacGCAGCucuggaGGAUgucGGCGgGCUGGAGg -3'
miRNA:   3'- -CCGG--CGUCGug----UCUA---UCGC-CGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 118369 0.68 0.881999
Target:  5'- aGGUCGCGGUAgAGAUacugccgcucGGCGGCg---- -3'
miRNA:   3'- -CCGGCGUCGUgUCUA----------UCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 120063 0.69 0.835559
Target:  5'- cGGCCGCGGaggccgaCGCGGcgGUGGCGGCg---- -3'
miRNA:   3'- -CCGGCGUC-------GUGUC--UAUCGCCGacuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.