miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 121748 0.67 0.91406
Target:  5'- cGGCgGCgAGaCGgAGAUGGCGGUgcccGAGGc -3'
miRNA:   3'- -CCGgCG-UC-GUgUCUAUCGCCGa---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 122344 0.67 0.90689
Target:  5'- uGGCCGUccggAGCACcgAGGUcugcuacGGCGGCagcuaccUGAAGg -3'
miRNA:   3'- -CCGGCG----UCGUG--UCUA-------UCGCCG-------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 122746 0.66 0.92999
Target:  5'- aGGCCGCGGCAUccucgagcuGAUcgagcgcuccgcgAGCGGCcucgacggcgUGGAGu -3'
miRNA:   3'- -CCGGCGUCGUGu--------CUA-------------UCGCCG----------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 123276 0.7 0.756152
Target:  5'- gGGCCGCGGUcgucGCGGGagaccuGCuGCUGGAGg -3'
miRNA:   3'- -CCGGCGUCG----UGUCUau----CGcCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 123329 0.72 0.657039
Target:  5'- gGGCCGCAGCugGG--GGUGGCg---- -3'
miRNA:   3'- -CCGGCGUCGugUCuaUCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 123987 0.69 0.83143
Target:  5'- cGCCGUGGCGCcggucaucuacgugaAGcgGGCGGCcgcgGAAGa -3'
miRNA:   3'- cCGGCGUCGUG---------------UCuaUCGCCGa---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 124530 0.7 0.792369
Target:  5'- aGCCGCcgacgcuGGCGCu----GCGGCUGAAGc -3'
miRNA:   3'- cCGGCG-------UCGUGucuauCGCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 125747 0.7 0.765616
Target:  5'- gGGCCGCGGgACGGcggccGGCGGCUc--- -3'
miRNA:   3'- -CCGGCGUCgUGUCua---UCGCCGAcuuc -5'
10708 5' -55.6 NC_002794.1 + 126243 0.67 0.901923
Target:  5'- uGGCgauCGUGGCGCGcGAggucGGCGGCUGGc- -3'
miRNA:   3'- -CCG---GCGUCGUGU-CUa---UCGCCGACUuc -5'
10708 5' -55.6 NC_002794.1 + 128804 0.74 0.565807
Target:  5'- -uCCGCGGCACGcguGGUGGCGGCUcGGAc -3'
miRNA:   3'- ccGGCGUCGUGU---CUAUCGCCGA-CUUc -5'
10708 5' -55.6 NC_002794.1 + 129051 0.7 0.774964
Target:  5'- cGGUCGUGGCGCGcgacGGUGugucGCGGCUGgcGg -3'
miRNA:   3'- -CCGGCGUCGUGU----CUAU----CGCCGACuuC- -5'
10708 5' -55.6 NC_002794.1 + 129931 0.71 0.727144
Target:  5'- aGGCCGUGGCgACGGcggcGGCGGCggcucUGGAGa -3'
miRNA:   3'- -CCGGCGUCG-UGUCua--UCGCCG-----ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 134166 0.73 0.585933
Target:  5'- uGGCCGUGGCcgcGCGGAUGGCcaccucguaucGGCUGGu- -3'
miRNA:   3'- -CCGGCGUCG---UGUCUAUCG-----------CCGACUuc -5'
10708 5' -55.6 NC_002794.1 + 137987 0.73 0.636703
Target:  5'- cGCCGCAGCGCuGGU-GCaGCUGGGc -3'
miRNA:   3'- cCGGCGUCGUGuCUAuCGcCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 138062 0.66 0.935513
Target:  5'- uGGCCagGCAGguCAGu---CGGUUGAAGg -3'
miRNA:   3'- -CCGG--CGUCguGUCuaucGCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 138588 0.66 0.930504
Target:  5'- aGGCgCGuCGGCGCGGcggagAGCGGCUu--- -3'
miRNA:   3'- -CCG-GC-GUCGUGUCua---UCGCCGAcuuc -5'
10708 5' -55.6 NC_002794.1 + 138992 0.68 0.881999
Target:  5'- gGGCCuGC-GCGaAGGcuuuGCGGCUGAAGa -3'
miRNA:   3'- -CCGG-CGuCGUgUCUau--CGCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 140024 0.75 0.497109
Target:  5'- aGGCCGCGGCccccGCGGGcGGCGGgaGAc- -3'
miRNA:   3'- -CCGGCGUCG----UGUCUaUCGCCgaCUuc -5'
10708 5' -55.6 NC_002794.1 + 140304 0.68 0.874914
Target:  5'- cGGCCaaGGC-CuGccGGCGGCUGGAGa -3'
miRNA:   3'- -CCGGcgUCGuGuCuaUCGCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 142214 0.75 0.497109
Target:  5'- cGGCgGCAGCggcgguGCGGggAGCGGCgGAGGc -3'
miRNA:   3'- -CCGgCGUCG------UGUCuaUCGCCGaCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.