miRNA display CGI


Results 101 - 120 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 142319 0.77 0.389326
Target:  5'- aGGCgGCGGCGCAGGcggcggaGGCGGCgGAGGc -3'
miRNA:   3'- -CCGgCGUCGUGUCUa------UCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 142367 0.71 0.697407
Target:  5'- aGGCgGCGGagGCGGAgggAGCGGC-GGAGa -3'
miRNA:   3'- -CCGgCGUCg-UGUCUa--UCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 142919 0.67 0.91406
Target:  5'- gGGCCGgAGCA-GGAUguagaagcaGGUGGCcGAGGg -3'
miRNA:   3'- -CCGGCgUCGUgUCUA---------UCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 143061 0.73 0.626526
Target:  5'- aGGCCGUAGCGCccgcGGCGGCagacguagUGGAGg -3'
miRNA:   3'- -CCGGCGUCGUGucuaUCGCCG--------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 143122 0.68 0.852391
Target:  5'- cGGCCGUGGCGCAGGUcucgGGCcacuccccGCgGAAGu -3'
miRNA:   3'- -CCGGCGUCGUGUCUA----UCGc-------CGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 143211 0.76 0.45956
Target:  5'- cGGUCcCAGCGCAGGUGGCGGaaccacagGAAGa -3'
miRNA:   3'- -CCGGcGUCGUGUCUAUCGCCga------CUUC- -5'
10708 5' -55.6 NC_002794.1 + 143285 0.66 0.925259
Target:  5'- cGGCCGCucggGGUcggGCGGGUGcagcGCGGCgggaugGAAGu -3'
miRNA:   3'- -CCGGCG----UCG---UGUCUAU----CGCCGa-----CUUC- -5'
10708 5' -55.6 NC_002794.1 + 150801 0.66 0.944825
Target:  5'- aGGCCccGCGGCggACGGccgAGCcGCUGGAGc -3'
miRNA:   3'- -CCGG--CGUCG--UGUCua-UCGcCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 152588 0.68 0.881999
Target:  5'- cGGCCGCcacgucccugcGGCGCGGGcccaAGCGGCg---- -3'
miRNA:   3'- -CCGGCG-----------UCGUGUCUa---UCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 153418 0.66 0.949132
Target:  5'- cGCCGC-GCGCGGAgccgAGCugGGCgUGGAc -3'
miRNA:   3'- cCGGCGuCGUGUCUa---UCG--CCG-ACUUc -5'
10708 5' -55.6 NC_002794.1 + 156414 0.78 0.356945
Target:  5'- cGGCCGCGGcCACGGccGGCGGgUGAGa -3'
miRNA:   3'- -CCGGCGUC-GUGUCuaUCGCCgACUUc -5'
10708 5' -55.6 NC_002794.1 + 158533 0.67 0.901923
Target:  5'- -cCCGCAGCAgAGGacGCGGCcGAGa -3'
miRNA:   3'- ccGGCGUCGUgUCUauCGCCGaCUUc -5'
10708 5' -55.6 NC_002794.1 + 160004 0.68 0.881999
Target:  5'- cGCuCGCGguGCGCAGAUGGcCGGUgucGGAGu -3'
miRNA:   3'- cCG-GCGU--CGUGUCUAUC-GCCGa--CUUC- -5'
10708 5' -55.6 NC_002794.1 + 176197 0.7 0.793271
Target:  5'- --aCGCuGUACGGGUGGCGGaugGAAGg -3'
miRNA:   3'- ccgGCGuCGUGUCUAUCGCCga-CUUC- -5'
10708 5' -55.6 NC_002794.1 + 177957 0.7 0.784185
Target:  5'- aGGUCGguGgACGGugGUGGaCGGUUGGAGg -3'
miRNA:   3'- -CCGGCguCgUGUC--UAUC-GCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 182741 0.66 0.949132
Target:  5'- cGGCCccagaaagacGCGGUACAGGUAGCaGCc---- -3'
miRNA:   3'- -CCGG----------CGUCGUGUCUAUCGcCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 184059 0.73 0.593011
Target:  5'- gGGCCGCGGCgaaGCGGcacgcgcccacgguGUAGCGGCaGAAc -3'
miRNA:   3'- -CCGGCGUCG---UGUC--------------UAUCGCCGaCUUc -5'
10708 5' -55.6 NC_002794.1 + 184984 0.66 0.940286
Target:  5'- aGCaCGCAGCGCGcGA-AGCGGCg---- -3'
miRNA:   3'- cCG-GCGUCGUGU-CUaUCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 185571 0.67 0.888866
Target:  5'- uGCCGCGGCAgGGcgcGCGGCUc--- -3'
miRNA:   3'- cCGGCGUCGUgUCuauCGCCGAcuuc -5'
10708 5' -55.6 NC_002794.1 + 186208 0.72 0.667182
Target:  5'- gGGCCcCAGgGCAGAUGGCGGUccGGGu -3'
miRNA:   3'- -CCGGcGUCgUGUCUAUCGCCGacUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.