Results 121 - 129 of 129 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10708 | 5' | -55.6 | NC_002794.1 | + | 186312 | 0.66 | 0.942129 |
|
Target: 5'- cGCCGCGGCGCGcucguccuccaacacGAUcgacGGCGGCg---- -3' miRNA: 3'- cCGGCGUCGUGU---------------CUA----UCGCCGacuuc -5' |
|||||||
| 10708 | 5' | -55.6 | NC_002794.1 | + | 186389 | 0.66 | 0.940286 |
|
Target: 5'- cGCCGCAGcCGCAGcc-GCGGCc---- -3' miRNA: 3'- cCGGCGUC-GUGUCuauCGCCGacuuc -5' |
|||||||
| 10708 | 5' | -55.6 | NC_002794.1 | + | 187236 | 1.1 | 0.003116 |
|
Target: 5'- uGGCCGCAGCACAGAUAGCGGCUGAAGu -3' miRNA: 3'- -CCGGCGUCGUGUCUAUCGCCGACUUC- -5' |
|||||||
| 10708 | 5' | -55.6 | NC_002794.1 | + | 188251 | 0.71 | 0.746579 |
|
Target: 5'- cGGCgGCGGCGgcGGUAGCGGCgGGc- -3' miRNA: 3'- -CCGgCGUCGUguCUAUCGCCGaCUuc -5' |
|||||||
| 10708 | 5' | -55.6 | NC_002794.1 | + | 190030 | 0.71 | 0.727144 |
|
Target: 5'- cGGCCgGUAGCGCAcGUAGC-GCUGAc- -3' miRNA: 3'- -CCGG-CGUCGUGUcUAUCGcCGACUuc -5' |
|||||||
| 10708 | 5' | -55.6 | NC_002794.1 | + | 191870 | 0.78 | 0.349151 |
|
Target: 5'- aGGCCgGCGGCGgAGggGGCGGCgGAGGc -3' miRNA: 3'- -CCGG-CGUCGUgUCuaUCGCCGaCUUC- -5' |
|||||||
| 10708 | 5' | -55.6 | NC_002794.1 | + | 192018 | 0.71 | 0.745616 |
|
Target: 5'- uGGCCGCGGCugcuguuucugugGCGGc-GGCGGCUGc-- -3' miRNA: 3'- -CCGGCGUCG-------------UGUCuaUCGCCGACuuc -5' |
|||||||
| 10708 | 5' | -55.6 | NC_002794.1 | + | 192156 | 0.68 | 0.860104 |
|
Target: 5'- cGGUCGCGGCGgagccugcggUAGGUccggcgaaGGCGGCcGAAGc -3' miRNA: 3'- -CCGGCGUCGU----------GUCUA--------UCGCCGaCUUC- -5' |
|||||||
| 10708 | 5' | -55.6 | NC_002794.1 | + | 194112 | 0.67 | 0.899385 |
|
Target: 5'- uGCUGCGGCACcgcgcgcaCGGCUGAGGc -3' miRNA: 3'- cCGGCGUCGUGucuauc--GCCGACUUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home