miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 152588 0.68 0.881999
Target:  5'- cGGCCGCcacgucccugcGGCGCGGGcccaAGCGGCg---- -3'
miRNA:   3'- -CCGGCG-----------UCGUGUCUa---UCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 150801 0.66 0.944825
Target:  5'- aGGCCccGCGGCggACGGccgAGCcGCUGGAGc -3'
miRNA:   3'- -CCGG--CGUCG--UGUCua-UCGcCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 143285 0.66 0.925259
Target:  5'- cGGCCGCucggGGUcggGCGGGUGcagcGCGGCgggaugGAAGu -3'
miRNA:   3'- -CCGGCG----UCG---UGUCUAU----CGCCGa-----CUUC- -5'
10708 5' -55.6 NC_002794.1 + 143211 0.76 0.45956
Target:  5'- cGGUCcCAGCGCAGGUGGCGGaaccacagGAAGa -3'
miRNA:   3'- -CCGGcGUCGUGUCUAUCGCCga------CUUC- -5'
10708 5' -55.6 NC_002794.1 + 143122 0.68 0.852391
Target:  5'- cGGCCGUGGCGCAGGUcucgGGCcacuccccGCgGAAGu -3'
miRNA:   3'- -CCGGCGUCGUGUCUA----UCGc-------CGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 143061 0.73 0.626526
Target:  5'- aGGCCGUAGCGCccgcGGCGGCagacguagUGGAGg -3'
miRNA:   3'- -CCGGCGUCGUGucuaUCGCCG--------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 142919 0.67 0.91406
Target:  5'- gGGCCGgAGCA-GGAUguagaagcaGGUGGCcGAGGg -3'
miRNA:   3'- -CCGGCgUCGUgUCUA---------UCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 142367 0.71 0.697407
Target:  5'- aGGCgGCGGagGCGGAgggAGCGGC-GGAGa -3'
miRNA:   3'- -CCGgCGUCg-UGUCUa--UCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 142319 0.77 0.389326
Target:  5'- aGGCgGCGGCGCAGGcggcggaGGCGGCgGAGGc -3'
miRNA:   3'- -CCGgCGUCGUGUCUa------UCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 142214 0.75 0.497109
Target:  5'- cGGCgGCAGCggcgguGCGGggAGCGGCgGAGGc -3'
miRNA:   3'- -CCGgCGUCG------UGUCuaUCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 140304 0.68 0.874914
Target:  5'- cGGCCaaGGC-CuGccGGCGGCUGGAGa -3'
miRNA:   3'- -CCGGcgUCGuGuCuaUCGCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 140024 0.75 0.497109
Target:  5'- aGGCCGCGGCccccGCGGGcGGCGGgaGAc- -3'
miRNA:   3'- -CCGGCGUCG----UGUCUaUCGCCgaCUuc -5'
10708 5' -55.6 NC_002794.1 + 138992 0.68 0.881999
Target:  5'- gGGCCuGC-GCGaAGGcuuuGCGGCUGAAGa -3'
miRNA:   3'- -CCGG-CGuCGUgUCUau--CGCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 138588 0.66 0.930504
Target:  5'- aGGCgCGuCGGCGCGGcggagAGCGGCUu--- -3'
miRNA:   3'- -CCG-GC-GUCGUGUCua---UCGCCGAcuuc -5'
10708 5' -55.6 NC_002794.1 + 138062 0.66 0.935513
Target:  5'- uGGCCagGCAGguCAGu---CGGUUGAAGg -3'
miRNA:   3'- -CCGG--CGUCguGUCuaucGCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 137987 0.73 0.636703
Target:  5'- cGCCGCAGCGCuGGU-GCaGCUGGGc -3'
miRNA:   3'- cCGGCGUCGUGuCUAuCGcCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 134166 0.73 0.585933
Target:  5'- uGGCCGUGGCcgcGCGGAUGGCcaccucguaucGGCUGGu- -3'
miRNA:   3'- -CCGGCGUCG---UGUCUAUCG-----------CCGACUuc -5'
10708 5' -55.6 NC_002794.1 + 129931 0.71 0.727144
Target:  5'- aGGCCGUGGCgACGGcggcGGCGGCggcucUGGAGa -3'
miRNA:   3'- -CCGGCGUCG-UGUCua--UCGCCG-----ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 129051 0.7 0.774964
Target:  5'- cGGUCGUGGCGCGcgacGGUGugucGCGGCUGgcGg -3'
miRNA:   3'- -CCGGCGUCGUGU----CUAU----CGCCGACuuC- -5'
10708 5' -55.6 NC_002794.1 + 128804 0.74 0.565807
Target:  5'- -uCCGCGGCACGcguGGUGGCGGCUcGGAc -3'
miRNA:   3'- ccGGCGUCGUGU---CUAUCGCCGA-CUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.