miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 113883 0.71 0.707385
Target:  5'- cGGCCGCGGCGCGcGUcggcGCGGuCUGcAGGa -3'
miRNA:   3'- -CCGGCGUCGUGUcUAu---CGCC-GAC-UUC- -5'
10708 5' -55.6 NC_002794.1 + 113615 0.69 0.828094
Target:  5'- cGCCGCGGC-CAGGUucaGGUUGAAc -3'
miRNA:   3'- cCGGCGUCGuGUCUAucgCCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 112456 0.71 0.736907
Target:  5'- cGG-CGCAGCGuCcGGUAGCGGCucUGGAGc -3'
miRNA:   3'- -CCgGCGUCGU-GuCUAUCGCCG--ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 112385 0.66 0.925259
Target:  5'- cGGCaCGCAGgGCGGcgaucuUGGCGcGCUGcAGc -3'
miRNA:   3'- -CCG-GCGUCgUGUCu-----AUCGC-CGACuUC- -5'
10708 5' -55.6 NC_002794.1 + 112356 0.71 0.707385
Target:  5'- cGGCgGCGGgGCGGggAGCuGCUGGAa -3'
miRNA:   3'- -CCGgCGUCgUGUCuaUCGcCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 111656 0.67 0.919778
Target:  5'- cGGCCGCGGCcacgcccguCGGAUA-CGGUcguccaggccgUGAAGa -3'
miRNA:   3'- -CCGGCGUCGu--------GUCUAUcGCCG-----------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 111136 0.66 0.949132
Target:  5'- cGGCCGguGCuccACGcGGUAGCGGgUcAGGc -3'
miRNA:   3'- -CCGGCguCG---UGU-CUAUCGCCgAcUUC- -5'
10708 5' -55.6 NC_002794.1 + 110625 0.72 0.650944
Target:  5'- aGCCGCGGCGCcgcggcggcggggucGGGUuucuccGGCGGCUGcAGa -3'
miRNA:   3'- cCGGCGUCGUG---------------UCUA------UCGCCGACuUC- -5'
10708 5' -55.6 NC_002794.1 + 108330 0.66 0.935513
Target:  5'- uGGaCgGCGGCGCAGGaggaGGUGGC-GGAGc -3'
miRNA:   3'- -CC-GgCGUCGUGUCUa---UCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 108178 0.69 0.84448
Target:  5'- cGCCGCGacGCGCGGAcugcgAGCGGCg---- -3'
miRNA:   3'- cCGGCGU--CGUGUCUa----UCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 107880 0.67 0.919778
Target:  5'- cGGagGCGGCGCGGcggguGCGGCUGccGg -3'
miRNA:   3'- -CCggCGUCGUGUCuau--CGCCGACuuC- -5'
10708 5' -55.6 NC_002794.1 + 107388 0.68 0.867614
Target:  5'- cGGCCGUcgggcuGGCGCuGAUccucGGCGGCUa--- -3'
miRNA:   3'- -CCGGCG------UCGUGuCUA----UCGCCGAcuuc -5'
10708 5' -55.6 NC_002794.1 + 106980 0.7 0.784185
Target:  5'- cGGCgGcCGGCACGGcgGUGGCGGCg---- -3'
miRNA:   3'- -CCGgC-GUCGUGUC--UAUCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 105401 0.69 0.811003
Target:  5'- cGGCCGCcGCGCGGAUcuCGGCc---- -3'
miRNA:   3'- -CCGGCGuCGUGUCUAucGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 104519 0.71 0.746579
Target:  5'- gGGCUGaGGCGCGGGUGGC-GCggGAAGa -3'
miRNA:   3'- -CCGGCgUCGUGUCUAUCGcCGa-CUUC- -5'
10708 5' -55.6 NC_002794.1 + 103578 0.66 0.949132
Target:  5'- uGGCCgacgaGCAGCggucggGCAGGcAGCGGCggcacgcgcucuUGGAGa -3'
miRNA:   3'- -CCGG-----CGUCG------UGUCUaUCGCCG------------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 102181 0.66 0.925259
Target:  5'- uGGCgCGCGGCGaGGAccUGGCGGCcgccgugacGGAGg -3'
miRNA:   3'- -CCG-GCGUCGUgUCU--AUCGCCGa--------CUUC- -5'
10708 5' -55.6 NC_002794.1 + 101586 0.69 0.819633
Target:  5'- cGCCGCGGC-CGGGggGGCGGgUGccGg -3'
miRNA:   3'- cCGGCGUCGuGUCUa-UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 101264 0.8 0.271518
Target:  5'- gGGCCGCccccGGCGCcGGUGGCGGCggcggGGAGg -3'
miRNA:   3'- -CCGGCG----UCGUGuCUAUCGCCGa----CUUC- -5'
10708 5' -55.6 NC_002794.1 + 100800 0.67 0.911708
Target:  5'- cGGCCGCuucuGCGCcuacgugccgGGCGGCgGggGc -3'
miRNA:   3'- -CCGGCGu---CGUGucua------UCGCCGaCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.