miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 100456 0.68 0.881999
Target:  5'- cGGCgGCGGCGCcuucccGGUGGCGGagaacCUGGAc -3'
miRNA:   3'- -CCGgCGUCGUGu-----CUAUCGCC-----GACUUc -5'
10708 5' -55.6 NC_002794.1 + 98933 0.72 0.646877
Target:  5'- uGGgCGCGGC-CGGGaAGgGGCUGggGc -3'
miRNA:   3'- -CCgGCGUCGuGUCUaUCgCCGACuuC- -5'
10708 5' -55.6 NC_002794.1 + 98357 0.68 0.881999
Target:  5'- cGGCCGaucgccGCGCGGcUGGCGGgaGAc- -3'
miRNA:   3'- -CCGGCgu----CGUGUCuAUCGCCgaCUuc -5'
10708 5' -55.6 NC_002794.1 + 95821 0.69 0.809258
Target:  5'- cGGCgGCGGC-CGGGggAGCGGCggcggcggccggGGAGg -3'
miRNA:   3'- -CCGgCGUCGuGUCUa-UCGCCGa-----------CUUC- -5'
10708 5' -55.6 NC_002794.1 + 95783 0.71 0.727144
Target:  5'- cGGCCGgGGCG-AGAggcGCGGCgGAGGa -3'
miRNA:   3'- -CCGGCgUCGUgUCUau-CGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 95023 0.68 0.867614
Target:  5'- cGGCUguGCGGCAUcucgccGGUGGCGGCgcccGAGGc -3'
miRNA:   3'- -CCGG--CGUCGUGu-----CUAUCGCCGa---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 94281 0.66 0.944825
Target:  5'- cGG-CGCGGCccgaGCGGggGGCGGCUcGGGc -3'
miRNA:   3'- -CCgGCGUCG----UGUCuaUCGCCGAcUUC- -5'
10708 5' -55.6 NC_002794.1 + 94050 0.76 0.450409
Target:  5'- cGGCgGCGGUGCGGG-GGCGGCgGggGg -3'
miRNA:   3'- -CCGgCGUCGUGUCUaUCGCCGaCuuC- -5'
10708 5' -55.6 NC_002794.1 + 91761 0.74 0.565807
Target:  5'- gGGCgGCAccGCGCAGGacgGGCuGCUGAAGg -3'
miRNA:   3'- -CCGgCGU--CGUGUCUa--UCGcCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 91597 0.66 0.944825
Target:  5'- uGGCCGCuGGUGCGc---GCGGCcGAGGg -3'
miRNA:   3'- -CCGGCG-UCGUGUcuauCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 89714 0.66 0.944825
Target:  5'- cGCCGCGGUGCcGAUccgcGCGGCgucgguccuUGggGa -3'
miRNA:   3'- cCGGCGUCGUGuCUAu---CGCCG---------ACuuC- -5'
10708 5' -55.6 NC_002794.1 + 88079 0.67 0.901923
Target:  5'- gGGCCGCGGUuugaACGGGgcGUGGUgaUGAGc -3'
miRNA:   3'- -CCGGCGUCG----UGUCUauCGCCG--ACUUc -5'
10708 5' -55.6 NC_002794.1 + 87244 0.67 0.888866
Target:  5'- gGGUgGgGGUGCAGGccgGGCGGgUGggGg -3'
miRNA:   3'- -CCGgCgUCGUGUCUa--UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 87202 0.67 0.888866
Target:  5'- gGGUgGgGGUGCAGGccgGGCGGgUGggGg -3'
miRNA:   3'- -CCGgCgUCGUGUCUa--UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 87160 0.67 0.888866
Target:  5'- gGGUgGgGGUGCAGGccgGGCGGgUGggGg -3'
miRNA:   3'- -CCGgCgUCGUGUCUa--UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 87118 0.67 0.888866
Target:  5'- gGGUgGgGGUGCAGGccgGGCGGgUGggGg -3'
miRNA:   3'- -CCGgCgUCGUGUCUa--UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 87058 0.7 0.783269
Target:  5'- gGGCCGgguccuguagcgaCAGCACGGugcaggccgGGCGGgUGggGg -3'
miRNA:   3'- -CCGGC-------------GUCGUGUCua-------UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 80407 0.72 0.667182
Target:  5'- cGCCGCGGCcCAGGUGGCgccgGGC-GggGc -3'
miRNA:   3'- cCGGCGUCGuGUCUAUCG----CCGaCuuC- -5'
10708 5' -55.6 NC_002794.1 + 76536 0.67 0.888866
Target:  5'- cGGCCGCGGCGCcGAc-GCGGUc---- -3'
miRNA:   3'- -CCGGCGUCGUGuCUauCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 75374 0.66 0.949132
Target:  5'- cGCCGCGGC-CGGc-GGCGGCg---- -3'
miRNA:   3'- cCGGCGUCGuGUCuaUCGCCGacuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.