miRNA display CGI


Results 101 - 120 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 72419 0.73 0.636703
Target:  5'- cGCCGCGGCGgAGGaggAGCcGGCgGAGGg -3'
miRNA:   3'- cCGGCGUCGUgUCUa--UCG-CCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 70677 0.67 0.919778
Target:  5'- cGCCGCGGCGguGAcguccugucGCcGCUGggGg -3'
miRNA:   3'- cCGGCGUCGUguCUau-------CGcCGACuuC- -5'
10708 5' -55.6 NC_002794.1 + 70273 0.68 0.852391
Target:  5'- aGGCCGCgaaGGC-CGGAgAGCaGGCcGggGg -3'
miRNA:   3'- -CCGGCG---UCGuGUCUaUCG-CCGaCuuC- -5'
10708 5' -55.6 NC_002794.1 + 70069 0.67 0.901923
Target:  5'- cGGCCGCAGcCGCAGcaaGGCGacgcaggccgcGCaGAAGa -3'
miRNA:   3'- -CCGGCGUC-GUGUCua-UCGC-----------CGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 66866 0.73 0.606191
Target:  5'- aGGCCGCGGCGu-----GCGGCUGAGc -3'
miRNA:   3'- -CCGGCGUCGUgucuauCGCCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 63451 0.66 0.935513
Target:  5'- cGGCCGCGGCGgCGacGAUgacgacgaGGCGGCg---- -3'
miRNA:   3'- -CCGGCGUCGU-GU--CUA--------UCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 61163 0.71 0.707385
Target:  5'- aGCgCGCGGUcCGGAUcGGCGGCUGGu- -3'
miRNA:   3'- cCG-GCGUCGuGUCUA-UCGCCGACUuc -5'
10708 5' -55.6 NC_002794.1 + 60512 0.66 0.940286
Target:  5'- cGUCGaCGGCACGGAggGGCuGgUGGAGa -3'
miRNA:   3'- cCGGC-GUCGUGUCUa-UCGcCgACUUC- -5'
10708 5' -55.6 NC_002794.1 + 58543 0.66 0.944825
Target:  5'- cGCCGCGGCGCGcgcgcuGcUGGCGcGCUGc-- -3'
miRNA:   3'- cCGGCGUCGUGU------CuAUCGC-CGACuuc -5'
10708 5' -55.6 NC_002794.1 + 57595 0.66 0.925259
Target:  5'- aGGCCGC-GCGCguggccaccgAGAaGGCGGCcGAc- -3'
miRNA:   3'- -CCGGCGuCGUG----------UCUaUCGCCGaCUuc -5'
10708 5' -55.6 NC_002794.1 + 56325 0.71 0.7173
Target:  5'- cGGCCGUGGC-CGGcgAcGCGGC-GAAGa -3'
miRNA:   3'- -CCGGCGUCGuGUCuaU-CGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 55949 0.67 0.888866
Target:  5'- uGCCGCAGCaggaACGGGUAGUaGUcGAGGu -3'
miRNA:   3'- cCGGCGUCG----UGUCUAUCGcCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 55301 0.69 0.811003
Target:  5'- cGGCgGCGGCgucgcgGCGGGcgcgGGCGGCUuccGAGGa -3'
miRNA:   3'- -CCGgCGUCG------UGUCUa---UCGCCGA---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 55270 0.71 0.736907
Target:  5'- aGCCGgGGgGCGGcgGUGGCGGCgacGAGGg -3'
miRNA:   3'- cCGGCgUCgUGUC--UAUCGCCGa--CUUC- -5'
10708 5' -55.6 NC_002794.1 + 50586 0.66 0.925259
Target:  5'- cGCgGCGGCugGG-UGGCcGGCgccgGggGg -3'
miRNA:   3'- cCGgCGUCGugUCuAUCG-CCGa---CuuC- -5'
10708 5' -55.6 NC_002794.1 + 49756 0.66 0.923639
Target:  5'- aGGCCGCucGCACgcgcucgucuccccGGA-GGCGGUUGGGc -3'
miRNA:   3'- -CCGGCGu-CGUG--------------UCUaUCGCCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 49061 0.66 0.935513
Target:  5'- gGGCgCGCAGCACGacucGCGGUaccaGAAGa -3'
miRNA:   3'- -CCG-GCGUCGUGUcuauCGCCGa---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 48564 0.66 0.940286
Target:  5'- cGGCCGCccGUcCAGAUgGGCGaGCcGGAGg -3'
miRNA:   3'- -CCGGCGu-CGuGUCUA-UCGC-CGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 48266 0.68 0.874914
Target:  5'- -cCCGCAGCACAGGcAG-GGCUccgccguccGAAGg -3'
miRNA:   3'- ccGGCGUCGUGUCUaUCgCCGA---------CUUC- -5'
10708 5' -55.6 NC_002794.1 + 47791 0.72 0.687374
Target:  5'- cGGCCGCAGUACAcGGUcucggcgaacaGGCGGaC-GAGGg -3'
miRNA:   3'- -CCGGCGUCGUGU-CUA-----------UCGCC-GaCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.