miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 63451 0.66 0.935513
Target:  5'- cGGCCGCGGCGgCGacGAUgacgacgaGGCGGCg---- -3'
miRNA:   3'- -CCGGCGUCGU-GU--CUA--------UCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 115709 0.66 0.935513
Target:  5'- cGGUCGC-GUACAGGagccacugGGCGGUcGggGg -3'
miRNA:   3'- -CCGGCGuCGUGUCUa-------UCGCCGaCuuC- -5'
10708 5' -55.6 NC_002794.1 + 138588 0.66 0.930504
Target:  5'- aGGCgCGuCGGCGCGGcggagAGCGGCUu--- -3'
miRNA:   3'- -CCG-GC-GUCGUGUCua---UCGCCGAcuuc -5'
10708 5' -55.6 NC_002794.1 + 122746 0.66 0.92999
Target:  5'- aGGCCGCGGCAUccucgagcuGAUcgagcgcuccgcgAGCGGCcucgacggcgUGGAGu -3'
miRNA:   3'- -CCGGCGUCGUGu--------CUA-------------UCGCCG----------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 50586 0.66 0.925259
Target:  5'- cGCgGCGGCugGG-UGGCcGGCgccgGggGg -3'
miRNA:   3'- cCGgCGUCGugUCuAUCG-CCGa---CuuC- -5'
10708 5' -55.6 NC_002794.1 + 57595 0.66 0.925259
Target:  5'- aGGCCGC-GCGCguggccaccgAGAaGGCGGCcGAc- -3'
miRNA:   3'- -CCGGCGuCGUG----------UCUaUCGCCGaCUuc -5'
10708 5' -55.6 NC_002794.1 + 115565 0.66 0.925259
Target:  5'- aGCCgaGCAGCuCGGcgaacgggacGUAGCGGCUGcGGu -3'
miRNA:   3'- cCGG--CGUCGuGUC----------UAUCGCCGACuUC- -5'
10708 5' -55.6 NC_002794.1 + 112385 0.66 0.925259
Target:  5'- cGGCaCGCAGgGCGGcgaucuUGGCGcGCUGcAGc -3'
miRNA:   3'- -CCG-GCGUCgUGUCu-----AUCGC-CGACuUC- -5'
10708 5' -55.6 NC_002794.1 + 143285 0.66 0.925259
Target:  5'- cGGCCGCucggGGUcggGCGGGUGcagcGCGGCgggaugGAAGu -3'
miRNA:   3'- -CCGGCG----UCG---UGUCUAU----CGCCGa-----CUUC- -5'
10708 5' -55.6 NC_002794.1 + 32310 0.66 0.925259
Target:  5'- cGGCCGC-GC-CGGcc-GCGGCcGGAGa -3'
miRNA:   3'- -CCGGCGuCGuGUCuauCGCCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 102181 0.66 0.925259
Target:  5'- uGGCgCGCGGCGaGGAccUGGCGGCcgccgugacGGAGg -3'
miRNA:   3'- -CCG-GCGUCGUgUCU--AUCGCCGa--------CUUC- -5'
10708 5' -55.6 NC_002794.1 + 49756 0.66 0.923639
Target:  5'- aGGCCGCucGCACgcgcucgucuccccGGA-GGCGGUUGGGc -3'
miRNA:   3'- -CCGGCGu-CGUG--------------UCUaUCGCCGACUUc -5'
10708 5' -55.6 NC_002794.1 + 70677 0.67 0.919778
Target:  5'- cGCCGCGGCGguGAcguccugucGCcGCUGggGg -3'
miRNA:   3'- cCGGCGUCGUguCUau-------CGcCGACuuC- -5'
10708 5' -55.6 NC_002794.1 + 107880 0.67 0.919778
Target:  5'- cGGagGCGGCGCGGcggguGCGGCUGccGg -3'
miRNA:   3'- -CCggCGUCGUGUCuau--CGCCGACuuC- -5'
10708 5' -55.6 NC_002794.1 + 111656 0.67 0.919778
Target:  5'- cGGCCGCGGCcacgcccguCGGAUA-CGGUcguccaggccgUGAAGa -3'
miRNA:   3'- -CCGGCGUCGu--------GUCUAUcGCCG-----------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 116129 0.67 0.919778
Target:  5'- cGCCGCGGCgGCGGc-GGCGGCg---- -3'
miRNA:   3'- cCGGCGUCG-UGUCuaUCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 114341 0.67 0.919217
Target:  5'- cGCCGCAGCGgcucguccgccgcCAGGgc-CGGCUGcAGGg -3'
miRNA:   3'- cCGGCGUCGU-------------GUCUaucGCCGAC-UUC- -5'
10708 5' -55.6 NC_002794.1 + 121748 0.67 0.91406
Target:  5'- cGGCgGCgAGaCGgAGAUGGCGGUgcccGAGGc -3'
miRNA:   3'- -CCGgCG-UC-GUgUCUAUCGCCGa---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 32875 0.67 0.91406
Target:  5'- gGGCgGCGGCgGCGGc-GGCGGCaucaUGGAGc -3'
miRNA:   3'- -CCGgCGUCG-UGUCuaUCGCCG----ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 117841 0.67 0.91406
Target:  5'- aGCaGCGGCACGGAgcgcgacGGgGGCUGGc- -3'
miRNA:   3'- cCGgCGUCGUGUCUa------UCgCCGACUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.