miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10709 3' -59.3 NC_002794.1 + 192399 0.66 0.808712
Target:  5'- cGCCGcgCCGGGGUaguCGAaacgccGCGaCGGGUCc -3'
miRNA:   3'- uUGGUuaGGUCCCG---GCU------CGC-GUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 188939 0.66 0.808712
Target:  5'- aGGCCcgcuGUCC-GGG-CGuGCGCAGGUUc -3'
miRNA:   3'- -UUGGu---UAGGuCCCgGCuCGCGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 130607 0.66 0.763843
Target:  5'- cGCCGAUCguGGGCCGguugacGGUGUucGGcGUCg -3'
miRNA:   3'- uUGGUUAGguCCCGGC------UCGCG--UC-CAG- -5'
10709 3' -59.3 NC_002794.1 + 137771 0.67 0.745051
Target:  5'- aGAgCAGgauGGGGUCGAgGUGCAGGUCg -3'
miRNA:   3'- -UUgGUUaggUCCCGGCU-CGCGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 115876 0.68 0.676743
Target:  5'- -uCCGgggcGUCCGGGGCguccgcgGAGCGCGGGg- -3'
miRNA:   3'- uuGGU----UAGGUCCCGg------CUCGCGUCCag -5'
10709 3' -59.3 NC_002794.1 + 592 0.68 0.696562
Target:  5'- -cUCGGUCCGuucGuGGCCGGGUGC-GGUCa -3'
miRNA:   3'- uuGGUUAGGU---C-CCGGCUCGCGuCCAG- -5'
10709 3' -59.3 NC_002794.1 + 41866 0.68 0.696562
Target:  5'- cGCCGGg-CAGGGCCGGGCGCu---- -3'
miRNA:   3'- uUGGUUagGUCCCGGCUCGCGuccag -5'
10709 3' -59.3 NC_002794.1 + 141659 0.67 0.725879
Target:  5'- cGGCCg--CCGgcGGGUCGAGCGaagaCGGGUCg -3'
miRNA:   3'- -UUGGuuaGGU--CCCGGCUCGC----GUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 37418 0.67 0.729741
Target:  5'- cAGCCGGUCCAGcGCCGucCGCAgcagcagcacgcacuGGUCu -3'
miRNA:   3'- -UUGGUUAGGUCcCGGCucGCGU---------------CCAG- -5'
10709 3' -59.3 NC_002794.1 + 105215 0.67 0.735509
Target:  5'- uGAUCAGggucgaCAGGGCCGuGCGCGGcGcCa -3'
miRNA:   3'- -UUGGUUag----GUCCCGGCuCGCGUC-CaG- -5'
10709 3' -59.3 NC_002794.1 + 114138 0.67 0.735509
Target:  5'- cGCCGG-CCAGGGCgCGcaGGCGCcGcGUCa -3'
miRNA:   3'- uUGGUUaGGUCCCG-GC--UCGCGuC-CAG- -5'
10709 3' -59.3 NC_002794.1 + 104286 0.67 0.735509
Target:  5'- uGCCGAacaggaUCUcGGGCCGGGUGCacuugAGGUUg -3'
miRNA:   3'- uUGGUU------AGGuCCCGGCUCGCG-----UCCAG- -5'
10709 3' -59.3 NC_002794.1 + 87030 0.67 0.735509
Target:  5'- cGCagGAUCCGGGGaCCG-GCGCGGcUCg -3'
miRNA:   3'- uUGg-UUAGGUCCC-GGCuCGCGUCcAG- -5'
10709 3' -59.3 NC_002794.1 + 86172 0.67 0.745051
Target:  5'- cGACCGGaugcCCcGGGCCGAGC-CGGGa- -3'
miRNA:   3'- -UUGGUUa---GGuCCCGGCUCGcGUCCag -5'
10709 3' -59.3 NC_002794.1 + 86364 0.67 0.745051
Target:  5'- cGACCGGaugcCCcGGGCCGAGC-CGGGa- -3'
miRNA:   3'- -UUGGUUa---GGuCCCGGCUCGcGUCCag -5'
10709 3' -59.3 NC_002794.1 + 86532 0.67 0.745051
Target:  5'- cGACCGGaugcCCcGGGCCGAGC-CGGGa- -3'
miRNA:   3'- -UUGGUUa---GGuCCCGGCUCGcGUCCag -5'
10709 3' -59.3 NC_002794.1 + 59123 0.66 0.808712
Target:  5'- cGGCCA--CCGaGGCCGAcuucGCGCAGGg- -3'
miRNA:   3'- -UUGGUuaGGUcCCGGCU----CGCGUCCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.