miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10709 3' -59.3 NC_002794.1 + 104286 0.67 0.735509
Target:  5'- uGCCGAacaggaUCUcGGGCCGGGUGCacuugAGGUUg -3'
miRNA:   3'- uUGGUU------AGGuCCCGGCUCGCG-----UCCAG- -5'
10709 3' -59.3 NC_002794.1 + 87030 0.67 0.735509
Target:  5'- cGCagGAUCCGGGGaCCG-GCGCGGcUCg -3'
miRNA:   3'- uUGg-UUAGGUCCC-GGCuCGCGUCcAG- -5'
10709 3' -59.3 NC_002794.1 + 37418 0.67 0.729741
Target:  5'- cAGCCGGUCCAGcGCCGucCGCAgcagcagcacgcacuGGUCu -3'
miRNA:   3'- -UUGGUUAGGUCcCGGCucGCGU---------------CCAG- -5'
10709 3' -59.3 NC_002794.1 + 141659 0.67 0.725879
Target:  5'- cGGCCg--CCGgcGGGUCGAGCGaagaCGGGUCg -3'
miRNA:   3'- -UUGGuuaGGU--CCCGGCUCGC----GUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 592 0.68 0.696562
Target:  5'- -cUCGGUCCGuucGuGGCCGGGUGC-GGUCa -3'
miRNA:   3'- uuGGUUAGGU---C-CCGGCUCGCGuCCAG- -5'
10709 3' -59.3 NC_002794.1 + 41866 0.68 0.696562
Target:  5'- cGCCGGg-CAGGGCCGGGCGCu---- -3'
miRNA:   3'- uUGGUUagGUCCCGGCUCGCGuccag -5'
10709 3' -59.3 NC_002794.1 + 115876 0.68 0.676743
Target:  5'- -uCCGgggcGUCCGGGGCguccgcgGAGCGCGGGg- -3'
miRNA:   3'- uuGGU----UAGGUCCCGg------CUCGCGUCCag -5'
10709 3' -59.3 NC_002794.1 + 143407 0.68 0.666777
Target:  5'- cGACCGG--CGcGGGCCGGGCGaAGGUCc -3'
miRNA:   3'- -UUGGUUagGU-CCCGGCUCGCgUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 59997 0.68 0.666777
Target:  5'- cGCCAGUUCAccGGcGCCGAGCGCAc--- -3'
miRNA:   3'- uUGGUUAGGU--CC-CGGCUCGCGUccag -5'
10709 3' -59.3 NC_002794.1 + 86804 0.68 0.655784
Target:  5'- aGACCuaggggaGAUCCAGGGCCGcgaccucgccgGGauCGGGUCg -3'
miRNA:   3'- -UUGG-------UUAGGUCCCGGC-----------UCgcGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 120187 0.68 0.646773
Target:  5'- cGCCAagcgGUUCaAGGGCaCGAGCG-GGGUCg -3'
miRNA:   3'- uUGGU----UAGG-UCCCG-GCUCGCgUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 117597 0.69 0.636749
Target:  5'- aGGCCuggcacgcGUCCAGGaacucGCCGAGCGaCAGGg- -3'
miRNA:   3'- -UUGGu-------UAGGUCC-----CGGCUCGC-GUCCag -5'
10709 3' -59.3 NC_002794.1 + 184681 0.69 0.636749
Target:  5'- uACCAGUaCCAGGacGCCG-GCGgaGGGUCg -3'
miRNA:   3'- uUGGUUA-GGUCC--CGGCuCGCg-UCCAG- -5'
10709 3' -59.3 NC_002794.1 + 54227 0.69 0.615699
Target:  5'- cGCC-GUCUcggaugaAGcGGCCGAGCGCGcGGUCc -3'
miRNA:   3'- uUGGuUAGG-------UC-CCGGCUCGCGU-CCAG- -5'
10709 3' -59.3 NC_002794.1 + 5019 0.69 0.596696
Target:  5'- gGACUcgcGUCCGGGGUgGGGgGgGGGUCa -3'
miRNA:   3'- -UUGGu--UAGGUCCCGgCUCgCgUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 143102 0.69 0.596696
Target:  5'- cGGCguGuUCCAGccccgcucGGCCGuGGCGCAGGUCu -3'
miRNA:   3'- -UUGguU-AGGUC--------CCGGC-UCGCGUCCAG- -5'
10709 3' -59.3 NC_002794.1 + 128264 0.69 0.596696
Target:  5'- --gCGGU-CGGGGCCGAGCGCGGaGcCg -3'
miRNA:   3'- uugGUUAgGUCCCGGCUCGCGUC-CaG- -5'
10709 3' -59.3 NC_002794.1 + 32594 0.69 0.586728
Target:  5'- gGGCCGGggCCGGGGCCGGG-GCcgGGGaUCg -3'
miRNA:   3'- -UUGGUUa-GGUCCCGGCUCgCG--UCC-AG- -5'
10709 3' -59.3 NC_002794.1 + 111861 0.7 0.576792
Target:  5'- cGCCAccgCCAGGGCCuuguAGCGCGcGGUg -3'
miRNA:   3'- uUGGUua-GGUCCCGGc---UCGCGU-CCAg -5'
10709 3' -59.3 NC_002794.1 + 179101 0.7 0.565905
Target:  5'- gAACCGuccggucGUCCGcGGuCCGGGCGCGcGGUCg -3'
miRNA:   3'- -UUGGU-------UAGGUcCC-GGCUCGCGU-CCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.