Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10709 | 5' | -60.8 | NC_002794.1 | + | 69028 | 0.68 | 0.680522 |
Target: 5'- --cGCCGGCGCCCUCGCcggcuUCCUc---- -3' miRNA: 3'- aguCGGCUGCGGGAGCG-----AGGAccucc -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 180909 | 0.68 | 0.670909 |
Target: 5'- cUCGGCCG-CGgUCUCGCcggcgCCgucGGAGGu -3' miRNA: 3'- -AGUCGGCuGCgGGAGCGa----GGa--CCUCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 16036 | 0.68 | 0.661267 |
Target: 5'- cCAGCCGACccgGCCuCUgGaUCCUcGGGGGa -3' miRNA: 3'- aGUCGGCUG---CGG-GAgCgAGGA-CCUCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 99546 | 0.68 | 0.661267 |
Target: 5'- -gGGCCGcggaaaccgcgcGCGCCCUcCGCgggCgaGGGGGg -3' miRNA: 3'- agUCGGC------------UGCGGGA-GCGa--GgaCCUCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 121807 | 0.68 | 0.661267 |
Target: 5'- cCGGCCGGCGCCUgcCGCUgCaGGAu- -3' miRNA: 3'- aGUCGGCUGCGGGa-GCGAgGaCCUcc -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 49756 | 0.68 | 0.661267 |
Target: 5'- -aGGCCGcucgcACGCgCUCGuCUCCccGGAGGc -3' miRNA: 3'- agUCGGC-----UGCGgGAGC-GAGGa-CCUCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 61834 | 0.68 | 0.651604 |
Target: 5'- gCGGCCGGCGUCaCUCcGCUCCgcgccccaUGGAc- -3' miRNA: 3'- aGUCGGCUGCGG-GAG-CGAGG--------ACCUcc -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 121939 | 0.68 | 0.651604 |
Target: 5'- -aGGCCGACGCgCUgaucgaGCgCCUGGAGc -3' miRNA: 3'- agUCGGCUGCGgGAg-----CGaGGACCUCc -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 102888 | 0.68 | 0.641927 |
Target: 5'- -uGGCCGACcugguGCCCaaGCgggucuaCCUGGGGGa -3' miRNA: 3'- agUCGGCUG-----CGGGagCGa------GGACCUCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 84620 | 0.69 | 0.632244 |
Target: 5'- cCAGCCGGCGUCa--GaCUCCUcGGAGa -3' miRNA: 3'- aGUCGGCUGCGGgagC-GAGGA-CCUCc -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 37249 | 0.69 | 0.593574 |
Target: 5'- --cGUCGACGCUCUCGCUCUccgucGGcGGg -3' miRNA: 3'- aguCGGCUGCGGGAGCGAGGa----CCuCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 78080 | 0.7 | 0.572451 |
Target: 5'- cCGGCCGcCGCCCUCGcCUCCgucgcgaaacgcGGcGGc -3' miRNA: 3'- aGUCGGCuGCGGGAGC-GAGGa-----------CCuCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 68315 | 0.7 | 0.555303 |
Target: 5'- gCGGCCGACGCgUUcCGCggCCUGGuGa -3' miRNA: 3'- aGUCGGCUGCGgGA-GCGa-GGACCuCc -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 23981 | 0.7 | 0.555303 |
Target: 5'- -aGGCCGGCGCCaccgUCGCUCCguccGAcGGg -3' miRNA: 3'- agUCGGCUGCGGg---AGCGAGGac--CU-CC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 131285 | 0.7 | 0.536431 |
Target: 5'- --cGCCGGCGCCgUCGCUCCgccgcccgUGGucGu -3' miRNA: 3'- aguCGGCUGCGGgAGCGAGG--------ACCucC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 14533 | 0.71 | 0.506724 |
Target: 5'- cUCGGCCacGGCGCUCUCGCcCCcgucgacgcgcgGGAGGc -3' miRNA: 3'- -AGUCGG--CUGCGGGAGCGaGGa-----------CCUCC- -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 150416 | 0.71 | 0.48132 |
Target: 5'- -aAGCCGugGCCCgcgagGCUggaCCUGGAGu -3' miRNA: 3'- agUCGGCugCGGGag---CGA---GGACCUCc -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 137151 | 0.71 | 0.472397 |
Target: 5'- cCGGCCGGcCGCCCUCGgUCCcGGc-- -3' miRNA: 3'- aGUCGGCU-GCGGGAGCgAGGaCCucc -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 63170 | 0.72 | 0.446147 |
Target: 5'- aCGGCCGAgGCCgCgaagcggucgCGCUCCUGGGu- -3' miRNA: 3'- aGUCGGCUgCGG-Ga---------GCGAGGACCUcc -5' |
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10709 | 5' | -60.8 | NC_002794.1 | + | 57111 | 0.72 | 0.429105 |
Target: 5'- aCGGCCGACGCCauggagCGCggCCUGGuGc -3' miRNA: 3'- aGUCGGCUGCGGga----GCGa-GGACCuCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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