miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1071 3' -48.7 NC_000929.1 + 29536 0.7 0.701344
Target:  5'- -aUCGcCGUGGaugguggggUGACAGuuaCCGCGACCGCc -3'
miRNA:   3'- aaAGU-GCACU---------AUUGUC---GGUGUUGGCG- -5'
1071 3' -48.7 NC_000929.1 + 32102 0.66 0.922617
Target:  5'- --aCAUGUGGUuugaAACAgGCgACAACgGCa -3'
miRNA:   3'- aaaGUGCACUA----UUGU-CGgUGUUGgCG- -5'
1071 3' -48.7 NC_000929.1 + 11632 0.66 0.909043
Target:  5'- ----uCGUGAgcuGCGGCCugAugUGCu -3'
miRNA:   3'- aaaguGCACUau-UGUCGGugUugGCG- -5'
1071 3' -48.7 NC_000929.1 + 18789 0.66 0.901768
Target:  5'- ---uGCGUGAUGAacuGGCacagGCGACUGCa -3'
miRNA:   3'- aaagUGCACUAUUg--UCGg---UGUUGGCG- -5'
1071 3' -48.7 NC_000929.1 + 15527 0.66 0.89725
Target:  5'- --aCGCG-GAUGugGGCCAgcuugcccgcaguauUAACCGUg -3'
miRNA:   3'- aaaGUGCaCUAUugUCGGU---------------GUUGGCG- -5'
1071 3' -48.7 NC_000929.1 + 15071 0.67 0.869526
Target:  5'- -aUCACG-GGcuGgAGCUGCAACCGUu -3'
miRNA:   3'- aaAGUGCaCUauUgUCGGUGUUGGCG- -5'
1071 3' -48.7 NC_000929.1 + 14822 0.68 0.811585
Target:  5'- --gCACGUGAUGcCAGCgCACAggagaaaaaagacGCCGa -3'
miRNA:   3'- aaaGUGCACUAUuGUCG-GUGU-------------UGGCg -5'
1071 3' -48.7 NC_000929.1 + 7367 0.68 0.802263
Target:  5'- aUUUACGUcaugacgggGAUGACAcCCGCGcaagGCCGCa -3'
miRNA:   3'- aAAGUGCA---------CUAUUGUcGGUGU----UGGCG- -5'
1071 3' -48.7 NC_000929.1 + 29600 0.7 0.701344
Target:  5'- -aUCACGUGAaaa-AGCCAC-GCCGg -3'
miRNA:   3'- aaAGUGCACUauugUCGGUGuUGGCg -5'
1071 3' -48.7 NC_000929.1 + 34895 0.66 0.909043
Target:  5'- --aUugGUGGcGAUAGUCaggucuggACAACCGCa -3'
miRNA:   3'- aaaGugCACUaUUGUCGG--------UGUUGGCG- -5'
1071 3' -48.7 NC_000929.1 + 11688 0.66 0.901768
Target:  5'- --aCAUcaGGccGCAGCuCACGACCGCa -3'
miRNA:   3'- aaaGUGcaCUauUGUCG-GUGUUGGCG- -5'
1071 3' -48.7 NC_000929.1 + 18723 0.66 0.894174
Target:  5'- aUUUCcaGCGUGuccagcGCGGUCAguGCCGCu -3'
miRNA:   3'- -AAAG--UGCACuau---UGUCGGUguUGGCG- -5'
1071 3' -48.7 NC_000929.1 + 7554 0.67 0.859815
Target:  5'- gUUUCAcCGUGGUGAauuucccCAGCCACGAauaCGa -3'
miRNA:   3'- -AAAGU-GCACUAUU-------GUCGGUGUUg--GCg -5'
1071 3' -48.7 NC_000929.1 + 1728 0.69 0.791705
Target:  5'- gUUCAgcauuuCGUcu--GCAGCCugAACCGCa -3'
miRNA:   3'- aAAGU------GCAcuauUGUCGGugUUGGCG- -5'
1071 3' -48.7 NC_000929.1 + 14032 0.69 0.791705
Target:  5'- ---gGCGUGAUGGCaAGCgGCAcaaacACCGUc -3'
miRNA:   3'- aaagUGCACUAUUG-UCGgUGU-----UGGCG- -5'
1071 3' -48.7 NC_000929.1 + 17537 0.71 0.689534
Target:  5'- gUUC-CGUgGAUGACAGCaGC-GCCGCa -3'
miRNA:   3'- aAAGuGCA-CUAUUGUCGgUGuUGGCG- -5'
1071 3' -48.7 NC_000929.1 + 30135 0.72 0.581928
Target:  5'- ---gAUGUGGUGACAGUCAgcgGGCCGCu -3'
miRNA:   3'- aaagUGCACUAUUGUCGGUg--UUGGCG- -5'
1071 3' -48.7 NC_000929.1 + 29647 1.11 0.001772
Target:  5'- uUUUCACGUGAUAACAGCCACAACCGCg -3'
miRNA:   3'- -AAAGUGCACUAUUGUCGGUGUUGGCG- -5'
1071 3' -48.7 NC_000929.1 + 22999 0.66 0.909043
Target:  5'- -aUCACG-GAUGGCGucaCCACGGCCu- -3'
miRNA:   3'- aaAGUGCaCUAUUGUc--GGUGUUGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.